Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC27.39■■□□□ 1.98
COL1A1P02452 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC27.39■■□□□ 1.98
COL1A1P02452 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
COL1A1P02452 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC27.39■■□□□ 1.97
COL1A1P02452 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
COL1A1P02452 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC27.38■■□□□ 1.97
COL1A1P02452 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC27.38■■□□□ 1.97
COL1A1P02452 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
COL1A1P02452 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC27.38■■□□□ 1.97
COL1A1P02452 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC27.38■■□□□ 1.97
COL1A1P02452 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC27.38■■□□□ 1.97
COL1A1P02452 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
COL1A1P02452 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC27.38■■□□□ 1.97
COL1A1P02452 GLI3-203ENST00000437480 451 ntTSL 2 BASIC27.38■■□□□ 1.97
COL1A1P02452 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC27.38■■□□□ 1.97
COL1A1P02452 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC27.38■■□□□ 1.97
COL1A1P02452 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC27.37■■□□□ 1.97
COL1A1P02452 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC27.37■■□□□ 1.97
COL1A1P02452 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
COL1A1P02452 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC27.37■■□□□ 1.97
COL1A1P02452 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC27.37■■□□□ 1.97
COL1A1P02452 SNX3-202ENST00000349379 890 ntTSL 2 BASIC27.37■■□□□ 1.97
COL1A1P02452 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC27.36■■□□□ 1.97
COL1A1P02452 IRS3P-201ENST00000223076 1006 ntBASIC27.36■■□□□ 1.97
COL1A1P02452 AC099791.1-201ENST00000416440 715 ntBASIC27.36■■□□□ 1.97
COL1A1P02452 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
COL1A1P02452 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
COL1A1P02452 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC27.36■■□□□ 1.97
COL1A1P02452 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC27.35■■□□□ 1.97
COL1A1P02452 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
COL1A1P02452 AL139125.2-201ENST00000623134 1869 ntBASIC27.35■■□□□ 1.97
COL1A1P02452 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC27.35■■□□□ 1.97
COL1A1P02452 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
COL1A1P02452 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
COL1A1P02452 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
COL1A1P02452 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
COL1A1P02452 pRNA.6-201ENST00000610482 90 ntBASIC27.34■■□□□ 1.97
COL1A1P02452 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
COL1A1P02452 pRNA.5-201ENST00000612139 90 ntBASIC27.34■■□□□ 1.97
COL1A1P02452 pRNA.11-201ENST00000618423 90 ntBASIC27.34■■□□□ 1.97
COL1A1P02452 pRNA.13-201ENST00000619112 90 ntBASIC27.34■■□□□ 1.97
COL1A1P02452 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC27.34■■□□□ 1.97
COL1A1P02452 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
COL1A1P02452 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
COL1A1P02452 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
COL1A1P02452 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
COL1A1P02452 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC27.34■■□□□ 1.97
COL1A1P02452 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC27.33■■□□□ 1.97
COL1A1P02452 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
COL1A1P02452 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
COL1A1P02452 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC27.33■■□□□ 1.97
COL1A1P02452 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC27.33■■□□□ 1.97
COL1A1P02452 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC27.33■■□□□ 1.97
COL1A1P02452 RHOF-204ENST00000537265 699 ntTSL 2 BASIC27.33■■□□□ 1.97
COL1A1P02452 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC27.33■■□□□ 1.97
COL1A1P02452 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC27.33■■□□□ 1.97
COL1A1P02452 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC27.33■■□□□ 1.96
COL1A1P02452 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC27.33■■□□□ 1.96
COL1A1P02452 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
COL1A1P02452 AC008764.7-201ENST00000593779 1081 ntBASIC27.32■■□□□ 1.96
COL1A1P02452 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC27.32■■□□□ 1.96
COL1A1P02452 LINC01124-201ENST00000409786 2117 ntBASIC27.32■■□□□ 1.96
COL1A1P02452 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
COL1A1P02452 AC141586.4-201ENST00000624558 1573 ntBASIC27.32■■□□□ 1.96
COL1A1P02452 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
COL1A1P02452 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
COL1A1P02452 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC27.32■■□□□ 1.96
COL1A1P02452 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
COL1A1P02452 LINC00543-201ENST00000567234 1845 ntBASIC27.31■■□□□ 1.96
COL1A1P02452 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC27.31■■□□□ 1.96
COL1A1P02452 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
COL1A1P02452 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
COL1A1P02452 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
COL1A1P02452 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC27.31■■□□□ 1.96
COL1A1P02452 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC27.31■■□□□ 1.96
COL1A1P02452 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC27.3■■□□□ 1.96
COL1A1P02452 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
COL1A1P02452 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC27.3■■□□□ 1.96
COL1A1P02452 AC004812.2-201ENST00000611079 2094 ntBASIC27.3■■□□□ 1.96
COL1A1P02452 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC27.3■■□□□ 1.96
COL1A1P02452 SLC47A1P1-202ENST00000449666 945 ntBASIC27.3■■□□□ 1.96
COL1A1P02452 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
COL1A1P02452 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
COL1A1P02452 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC27.29■■□□□ 1.96
COL1A1P02452 MPST-208ENST00000628507 698 ntTSL 5 BASIC27.29■■□□□ 1.96
COL1A1P02452 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
COL1A1P02452 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
COL1A1P02452 SHD-204ENST00000599689 1729 ntTSL 5 BASIC27.29■■□□□ 1.96
COL1A1P02452 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
COL1A1P02452 JTB-203ENST00000368589 1216 ntTSL 2 BASIC27.28■■□□□ 1.96
COL1A1P02452 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
COL1A1P02452 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC27.28■■□□□ 1.96
COL1A1P02452 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
COL1A1P02452 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC27.28■■□□□ 1.96
COL1A1P02452 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
COL1A1P02452 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC27.27■■□□□ 1.96
COL1A1P02452 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
COL1A1P02452 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
COL1A1P02452 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
COL1A1P02452 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC27.27■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms