Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 RN7SL564P-201ENST00000496309 250 ntBASIC15.83■□□□□ 0.12
CIITAP33076 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC15.83■□□□□ 0.12
CIITAP33076 HERC2P11-201ENST00000562845 725 ntBASIC15.83■□□□□ 0.12
CIITAP33076 AC100756.2-201ENST00000569537 736 ntBASIC15.83■□□□□ 0.12
CIITAP33076 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC15.83■□□□□ 0.12
CIITAP33076 ADAMTSL4-AS1-203ENST00000617352 1036 ntTSL 5 BASIC15.83■□□□□ 0.12
CIITAP33076 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
CIITAP33076 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CIITAP33076 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC15.83■□□□□ 0.12
CIITAP33076 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC15.83■□□□□ 0.12
CIITAP33076 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
CIITAP33076 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC15.83■□□□□ 0.12
CIITAP33076 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
CIITAP33076 ZFP1-201ENST00000332307 1502 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CIITAP33076 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CIITAP33076 CCNB2-201ENST00000288207 1556 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CIITAP33076 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CIITAP33076 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC15.83■□□□□ 0.12
CIITAP33076 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
CIITAP33076 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC15.83■□□□□ 0.12
CIITAP33076 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
CIITAP33076 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
CIITAP33076 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
CIITAP33076 LINC01535-206ENST00000592712 1699 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CIITAP33076 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
CIITAP33076 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CIITAP33076 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CIITAP33076 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
CIITAP33076 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CIITAP33076 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
CIITAP33076 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC15.82■□□□□ 0.12
CIITAP33076 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC15.82■□□□□ 0.12
CIITAP33076 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
CIITAP33076 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CIITAP33076 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CIITAP33076 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CIITAP33076 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CIITAP33076 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
CIITAP33076 GGCT-203ENST00000409144 836 ntTSL 2 BASIC15.82■□□□□ 0.12
CIITAP33076 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CIITAP33076 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC15.82■□□□□ 0.12
CIITAP33076 AC098935.1-201ENST00000446057 611 ntBASIC15.82■□□□□ 0.12
CIITAP33076 RN7SL181P-201ENST00000462921 277 ntBASIC15.82■□□□□ 0.12
CIITAP33076 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC15.82■□□□□ 0.12
CIITAP33076 AP002803.1-201ENST00000528836 498 ntBASIC15.82■□□□□ 0.12
CIITAP33076 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CIITAP33076 DNM1P30-201ENST00000563586 452 ntBASIC15.82■□□□□ 0.12
CIITAP33076 AC007952.4-201ENST00000573866 637 ntBASIC15.82■□□□□ 0.12
CIITAP33076 LINC01543-201ENST00000578367 900 ntTSL 5 BASIC15.82■□□□□ 0.12
CIITAP33076 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CIITAP33076 AL049840.2-201ENST00000602722 535 ntBASIC15.82■□□□□ 0.12
CIITAP33076 AC087045.2-201ENST00000606279 1003 ntBASIC15.82■□□□□ 0.12
CIITAP33076 AL161773.1-201ENST00000624845 863 ntBASIC15.82■□□□□ 0.12
CIITAP33076 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CIITAP33076 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CIITAP33076 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CIITAP33076 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CIITAP33076 CRISP2-201ENST00000339139 1382 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CIITAP33076 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC15.82■□□□□ 0.12
CIITAP33076 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CIITAP33076 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
CIITAP33076 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CIITAP33076 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CIITAP33076 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CIITAP33076 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CIITAP33076 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CIITAP33076 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
CIITAP33076 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC15.82■□□□□ 0.12
CIITAP33076 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
CIITAP33076 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CIITAP33076 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CIITAP33076 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC15.82■□□□□ 0.12
CIITAP33076 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CIITAP33076 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
CIITAP33076 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC15.82■□□□□ 0.12
CIITAP33076 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CIITAP33076 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CIITAP33076 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC15.81■□□□□ 0.12
CIITAP33076 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CIITAP33076 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CIITAP33076 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
CIITAP33076 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
CIITAP33076 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
CIITAP33076 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
CIITAP33076 SNORA50C-201ENST00000408535 133 ntBASIC15.81■□□□□ 0.12
CIITAP33076 RPL3P2-204ENST00000413027 1203 ntBASIC15.81■□□□□ 0.12
CIITAP33076 DDC-204ENST00000426377 1700 ntTSL 3 BASIC15.81■□□□□ 0.12
CIITAP33076 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC15.81■□□□□ 0.12
CIITAP33076 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC15.81■□□□□ 0.12
CIITAP33076 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC15.81■□□□□ 0.12
CIITAP33076 PES1P2-201ENST00000449745 1735 ntBASIC15.81■□□□□ 0.12
CIITAP33076 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
CIITAP33076 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
CIITAP33076 PLAT-211ENST00000524009 1613 ntTSL 2 BASIC15.81■□□□□ 0.12
CIITAP33076 TMCO5B-205ENST00000530020 894 ntBASIC15.81■□□□□ 0.12
CIITAP33076 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC15.81■□□□□ 0.12
CIITAP33076 KRT8P2-201ENST00000556193 944 ntBASIC15.81■□□□□ 0.12
CIITAP33076 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CIITAP33076 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CIITAP33076 AC025183.3-201ENST00000623526 1482 ntBASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms