Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 LINC02344-201ENST00000443576 644 ntTSL 2 BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 TRAPPC4-212ENST00000533058 1209 ntTSL 2 BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 GOLGA8N-205ENST00000569659 1791 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 DHRS12-202ENST00000280056 1324 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 LYG2-201ENST00000333017 862 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 PSMA7-202ENST00000370861 773 ntTSL 5 BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 MIR1249-201ENST00000408671 66 ntBASIC13.51□□□□□ -0.25
VPS13AQ96RL7 BX322557.2-201ENST00000445242 379 ntTSL 3 BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 RN7SL477P-201ENST00000488440 286 ntBASIC13.51□□□□□ -0.25
VPS13AQ96RL7 SNRPN-208ENST00000577565 1298 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 UBA52-213ENST00000599551 707 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 MECP2-213ENST00000622433 1071 ntTSL 5 BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 AL139220.2-222ENST00000627999 756 ntTSL 5 BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC13.5□□□□□ -0.25
VPS13AQ96RL7 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
VPS13AQ96RL7 CC2D1A-208ENST00000589606 3117 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
VPS13AQ96RL7 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
VPS13AQ96RL7 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC13.5□□□□□ -0.25
VPS13AQ96RL7 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
VPS13AQ96RL7 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
VPS13AQ96RL7 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC13.5□□□□□ -0.25
VPS13AQ96RL7 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
VPS13AQ96RL7 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC13.5□□□□□ -0.25
VPS13AQ96RL7 BMS1P8-203ENST00000567036 614 ntTSL 3 BASIC13.5□□□□□ -0.25
VPS13AQ96RL7 AC100778.4-201ENST00000581232 582 ntTSL 4 BASIC13.5□□□□□ -0.25
VPS13AQ96RL7 Metazoa_SRP.153-201ENST00000620153 341 ntBASIC13.5□□□□□ -0.25
VPS13AQ96RL7 AADACL4-201ENST00000376221 1575 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
VPS13AQ96RL7 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
VPS13AQ96RL7 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC13.5□□□□□ -0.25
VPS13AQ96RL7 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
VPS13AQ96RL7 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
VPS13AQ96RL7 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
VPS13AQ96RL7 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
VPS13AQ96RL7 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC13.5□□□□□ -0.25
VPS13AQ96RL7 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
VPS13AQ96RL7 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
VPS13AQ96RL7 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC13.5□□□□□ -0.25
VPS13AQ96RL7 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC13.5□□□□□ -0.25
VPS13AQ96RL7 SLIRP-201ENST00000238688 394 ntAPPRIS P3 TSL 2 BASIC13.5□□□□□ -0.25
VPS13AQ96RL7 MED27-202ENST00000357028 1281 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
VPS13AQ96RL7 IGLJ1-201ENST00000390320 127 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
VPS13AQ96RL7 ASLP1-201ENST00000428790 637 ntBASIC13.5□□□□□ -0.25
VPS13AQ96RL7 AC079742.1-201ENST00000434951 357 ntTSL 3 BASIC13.5□□□□□ -0.25
VPS13AQ96RL7 AL356289.1-203ENST00000439795 789 ntTSL 5 BASIC13.5□□□□□ -0.25
VPS13AQ96RL7 RPSAP16-201ENST00000447583 821 ntBASIC13.5□□□□□ -0.25
VPS13AQ96RL7 AC124242.1-203ENST00000517747 817 ntTSL 3 BASIC13.5□□□□□ -0.25
VPS13AQ96RL7 SELENOK-205ENST00000541726 814 ntAPPRIS ALT1 TSL 5 BASIC13.5□□□□□ -0.25
VPS13AQ96RL7 AC245369.3-201ENST00000624687 411 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
VPS13AQ96RL7 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
VPS13AQ96RL7 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
VPS13AQ96RL7 AC006486.2-201ENST00000624246 2199 ntBASIC13.5□□□□□ -0.25
VPS13AQ96RL7 TRIQK-219ENST00000523580 1630 ntTSL 2 BASIC13.5□□□□□ -0.25
VPS13AQ96RL7 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
VPS13AQ96RL7 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
VPS13AQ96RL7 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
VPS13AQ96RL7 LINC00967-203ENST00000518035 1502 ntTSL 2 BASIC13.49□□□□□ -0.25
VPS13AQ96RL7 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
VPS13AQ96RL7 HNRNPA1P68-201ENST00000425806 979 ntBASIC13.49□□□□□ -0.25
VPS13AQ96RL7 AC010894.2-201ENST00000444196 561 ntTSL 3 BASIC13.49□□□□□ -0.25
VPS13AQ96RL7 RPL3P9-201ENST00000463217 1183 ntBASIC13.49□□□□□ -0.25
VPS13AQ96RL7 CHIC2-204ENST00000512964 711 ntTSL 5 BASIC13.49□□□□□ -0.25
VPS13AQ96RL7 ROPN1L-AS1-201ENST00000513037 189 ntTSL 2 BASIC13.49□□□□□ -0.25
VPS13AQ96RL7 TMEM241-208ENST00000542162 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
VPS13AQ96RL7 HNRNPA1P11-201ENST00000580106 956 ntBASIC13.49□□□□□ -0.25
VPS13AQ96RL7 RN7SL460P-201ENST00000582806 258 ntBASIC13.49□□□□□ -0.25
VPS13AQ96RL7 AC099552.4-201ENST00000624248 949 ntBASIC13.49□□□□□ -0.25
VPS13AQ96RL7 OR2C1-201ENST00000304936 1406 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
VPS13AQ96RL7 TRO-225ENST00000622017 1403 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
VPS13AQ96RL7 COMMD10-207ENST00000632434 1433 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
VPS13AQ96RL7 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
VPS13AQ96RL7 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
VPS13AQ96RL7 USP39-207ENST00000450066 2086 ntTSL 2 BASIC13.49□□□□□ -0.25
VPS13AQ96RL7 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
VPS13AQ96RL7 PDZD11-201ENST00000239666 1043 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
VPS13AQ96RL7 RBMXP1-201ENST00000408004 1191 ntBASIC13.49□□□□□ -0.25
VPS13AQ96RL7 TUBB8P9-201ENST00000422534 1276 ntBASIC13.49□□□□□ -0.25
VPS13AQ96RL7 TUBB8P10-201ENST00000430210 1279 ntBASIC13.49□□□□□ -0.25
VPS13AQ96RL7 AL022725.1-201ENST00000436283 369 ntTSL 2 BASIC13.49□□□□□ -0.25
VPS13AQ96RL7 C5orf38-203ENST00000457752 387 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
VPS13AQ96RL7 RN7SL479P-201ENST00000472003 300 ntBASIC13.49□□□□□ -0.25
VPS13AQ96RL7 AL662899.2-201ENST00000503322 1266 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
VPS13AQ96RL7 UBE2D3-221ENST00000507845 577 ntTSL 4 BASIC13.49□□□□□ -0.25
VPS13AQ96RL7 AP001979.1-201ENST00000529222 751 ntBASIC13.49□□□□□ -0.25
VPS13AQ96RL7 KCCAT198-201ENST00000549251 549 ntTSL 4 BASIC13.49□□□□□ -0.25
VPS13AQ96RL7 AC025265.3-201ENST00000550175 468 ntTSL 3 BASIC13.49□□□□□ -0.25
VPS13AQ96RL7 PEX11A-204ENST00000561224 529 ntTSL 4 BASIC13.49□□□□□ -0.25
VPS13AQ96RL7 ALOX12P1-201ENST00000579299 1229 ntBASIC13.49□□□□□ -0.25
VPS13AQ96RL7 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
VPS13AQ96RL7 AC117489.1-201ENST00000625169 3217 ntBASIC13.49□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 69.8 ms