Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 USP19-206ENST00000417901 4706 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 ANKRD36B-204ENST00000438709 6067 ntTSL 5 BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 BRF1-202ENST00000379932 884 ntTSL 5 BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 MIR1227-201ENST00000408484 88 ntBASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 C2orf27AP3-201ENST00000434123 579 ntBASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 AC069218.1-201ENST00000435269 762 ntBASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 EEF1DP6-201ENST00000449232 372 ntBASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 PPOX-204ENST00000462866 473 ntTSL 5 BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 VPS18-202ENST00000558474 873 ntTSL 3 BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 LARP4-220ENST00000615080 856 ntTSL 5 BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 AL354718.3-201ENST00000616414 581 ntBASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 CR382287.1-201ENST00000623954 586 ntBASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 AFF2-202ENST00000342251 7313 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 EIF4G1-205ENST00000382330 5129 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 BRSK2-202ENST00000382179 3576 ntTSL 2 BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 AC010336.1-201ENST00000539278 4739 ntBASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 TCAF1P1-201ENST00000414990 2232 ntBASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 ZCCHC8-207ENST00000543897 5663 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 HPD-204ENST00000543163 1709 ntTSL 5 BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 TP53INP1-202ENST00000448464 5631 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 DGCR2-201ENST00000263196 4480 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 DGCR2-206ENST00000545799 4484 ntTSL 5 BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 MYO7A-205ENST00000458637 7336 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 AC012617.1-204ENST00000586340 2305 ntBASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 KLHL7-202ENST00000339077 5620 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 LDB3-205ENST00000429277 5436 ntTSL 2 BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 INF2-202ENST00000330634 7578 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 EDC3-201ENST00000315127 3763 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 NR3C2-203ENST00000358102 5893 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 TRPM2-203ENST00000397928 6221 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 MTX1P1-201ENST00000440904 838 ntBASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 AHRR-211ENST00000515206 462 ntTSL 5 BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 AC134698.3-201ENST00000523880 214 ntBASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 PRKXP1-201ENST00000561423 1122 ntBASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC11.9□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms