RNA–Protein interactions for RNA: ENST00000429277.6

LDB3-205, Transcript of LIM domain binding 3, humanhuman

TSL 2 BASIC

Gene LDB3, Length 5,436 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-205ENST00000429277 DCAF8L2P0C7V8 631 aa21.82■■□□□ 1.08
LDB3-205ENST00000429277 SUPT5HO00267 1087 aaKnown RBP20.67■□□□□ 0.9
LDB3-205ENST00000429277 NISCHQ9Y2I1 1504 aa20.64■□□□□ 0.89
LDB3-205ENST00000429277 PELP1Q8IZL8 1130 aaKnown RBP20.39■□□□□ 0.86
LDB3-205ENST00000429277 APLP2Q06481 763 aa20.14■□□□□ 0.81
LDB3-205ENST00000429277 SHROOM4Q9ULL8 1493 aa20.14■□□□□ 0.81
LDB3-205ENST00000429277 FAM9AQ8IZU1 332 aaPredicted RBP20.05■□□□□ 0.8
LDB3-205ENST00000429277 EHMT2Q96KQ7 1210 aa19.85■□□□□ 0.77
LDB3-205ENST00000429277 ZEB1P37275 1124 aaPredicted RBP19.5■□□□□ 0.71
LDB3-205ENST00000429277 CCER1Q8TC90 406 aaPredicted RBP19.47■□□□□ 0.71
LDB3-205ENST00000429277 CENPBP07199 599 aaPredicted RBP19.43■□□□□ 0.7
LDB3-205ENST00000429277 ERICH6Q7L0X2 663 aa19.34■□□□□ 0.69
LDB3-205ENST00000429277 PCGF6Q9BYE7 350 aa19.31■□□□□ 0.68
LDB3-205ENST00000429277 TRIM41Q8WV44 630 aa19.31■□□□□ 0.68
LDB3-205ENST00000429277 TTBK1Q5TCY1 1321 aaPredicted RBP19.25■□□□□ 0.67
LDB3-205ENST00000429277 ATP1B4Q9UN42 357 aaPredicted RBP19.16■□□□□ 0.66
LDB3-205ENST00000429277 UBTFP17480 764 aaKnown RBP19.13■□□□□ 0.65
LDB3-205ENST00000429277 RANGAP1P46060 587 aaPredicted RBP19.12■□□□□ 0.65
LDB3-205ENST00000429277 NEFLP07196 543 aa19.09■□□□□ 0.65
LDB3-205ENST00000429277 MYT1Q01538 1121 aa18.9■□□□□ 0.62
LDB3-205ENST00000429277 TRIM26Q12899 539 aaPredicted RBP18.68■□□□□ 0.58
LDB3-205ENST00000429277 YTHDC1Q96MU7 727 aaKnown RBP18.64■□□□□ 0.57
LDB3-205ENST00000429277 DAXXQ9UER7 740 aaPredicted RBP18.6■□□□□ 0.57
LDB3-205ENST00000429277 MYT1LQ9UL68 1186 aa18.58■□□□□ 0.56
LDB3-205ENST00000429277 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.55■□□□□ 0.56
LDB3-205ENST00000429277 HNRNPUL2Q1KMD3 747 aaKnown RBP18.55■□□□□ 0.56
LDB3-205ENST00000429277 PPARGC1BQ86YN6 1023 aaKnown RBP18.4■□□□□ 0.54
LDB3-205ENST00000429277 ITGAEP38570 1179 aa18.4■□□□□ 0.54
LDB3-205ENST00000429277 POLR3GLQ9BT43 218 aa18.39■□□□□ 0.53
LDB3-205ENST00000429277 HRCP23327 699 aa18.35■□□□□ 0.53
LDB3-205ENST00000429277 CHIC1Q5VXU3 224 aa18.24■□□□□ 0.51
LDB3-205ENST00000429277 SLC4A1APQ9BWU0 796 aaKnown RBP18.14■□□□□ 0.5
LDB3-205ENST00000429277 LOC105371045A0A1W2PR82 267 aa18.11■□□□□ 0.49
LDB3-205ENST00000429277 ZNF316A6NFI3 1004 aaPredicted RBP18.11■□□□□ 0.49
LDB3-205ENST00000429277 CLSPNQ9HAW4 1339 aa18.09■□□□□ 0.49
LDB3-205ENST00000429277 RTL5Q5HYW3 569 aaPredicted RBP18.09■□□□□ 0.49
LDB3-205ENST00000429277 FAM50AQ14320 339 aaKnown RBP18.04■□□□□ 0.48
LDB3-205ENST00000429277 CNGB1Q14028 1251 aaPredicted RBP18.01■□□□□ 0.47
LDB3-205ENST00000429277 TRIM52Q96A61 297 aa18.01■□□□□ 0.47
LDB3-205ENST00000429277 DIEXFQ68CQ4 756 aaKnown RBP18■□□□□ 0.47
LDB3-205ENST00000429277 ZBTB47Q9UFB7 747 aaPredicted RBP17.91■□□□□ 0.46
LDB3-205ENST00000429277 ANP32CO43423 234 aa17.87■□□□□ 0.45
LDB3-205ENST00000429277 NEUROD1Q13562 356 aa17.81■□□□□ 0.44
LDB3-205ENST00000429277 NEFMP07197 916 aa17.79■□□□□ 0.44
LDB3-205ENST00000429277 ABCC9O60706 1549 aa17.78■□□□□ 0.44
LDB3-205ENST00000429277 PABPN1Q86U42 306 aaKnown RBP eCLIP17.75■□□□□ 0.43
LDB3-205ENST00000429277 CDK11AQ9UQ88 783 aaPredicted RBP17.74■□□□□ 0.43
LDB3-205ENST00000429277 ZNF326Q5BKZ1 582 aaKnown RBP17.72■□□□□ 0.43
LDB3-205ENST00000429277 CANXP27824 592 aaKnown RBP17.67■□□□□ 0.42
LDB3-205ENST00000429277 FBLN2P98095 1184 aa17.67■□□□□ 0.42
LDB3-205ENST00000429277 CSRNP3Q8WYN3 585 aa17.58■□□□□ 0.4
LDB3-205ENST00000429277 BCANQ96GW7 911 aa17.55■□□□□ 0.4
LDB3-205ENST00000429277 SLC24A1O60721 1099 aa17.52■□□□□ 0.4
LDB3-205ENST00000429277 GTF3C3Q9Y5Q9 886 aa17.51■□□□□ 0.39
LDB3-205ENST00000429277 ANP32AP39687 249 aaKnown RBP17.5■□□□□ 0.39
LDB3-205ENST00000429277 ESF1Q9H501 851 aaKnown RBP17.49■□□□□ 0.39
LDB3-205ENST00000429277 ZNF777Q9ULD5 760 aaPredicted RBP17.42■□□□□ 0.38
LDB3-205ENST00000429277 P3H3Q8IVL6 736 aa17.41■□□□□ 0.38
LDB3-205ENST00000429277 TONSLQ96HA7 1378 aa17.4■□□□□ 0.38
LDB3-205ENST00000429277 ANP32BQ92688 251 aaKnown RBP17.37■□□□□ 0.37
LDB3-205ENST00000429277 NPM1P06748 294 aaKnown RBP eCLIP17.36■□□□□ 0.37
LDB3-205ENST00000429277 UPF2Q9HAU5 1272 aaKnown RBP17.34■□□□□ 0.37
LDB3-205ENST00000429277 STAG3Q9UJ98 1225 aa17.34■□□□□ 0.37
LDB3-205ENST00000429277 ACIN1Q9UKV3 1341 aaKnown RBP17.31■□□□□ 0.36
LDB3-205ENST00000429277 ARID3CA6NKF2 412 aa17.31■□□□□ 0.36
LDB3-205ENST00000429277 BCL11AQ9H165 835 aa17.29■□□□□ 0.36
LDB3-205ENST00000429277 HSP90AA1P07900 732 aaKnown RBP17.27■□□□□ 0.35
LDB3-205ENST00000429277 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.26■□□□□ 0.35
LDB3-205ENST00000429277 CHGAP10645 457 aaKnown RBP17.25■□□□□ 0.35
LDB3-205ENST00000429277 SCRIBQ14160 1630 aa17.19■□□□□ 0.34
LDB3-205ENST00000429277 TSPY4P0CV99 314 aa17.18■□□□□ 0.34
LDB3-205ENST00000429277 TSPY10P0CW01 314 aa17.18■□□□□ 0.34
LDB3-205ENST00000429277 NPM2Q86SE8 214 aaKnown RBP17.18■□□□□ 0.34
LDB3-205ENST00000429277 HNRNPUQ00839 825 aaKnown RBP eCLIP17.17■□□□□ 0.34
LDB3-205ENST00000429277 DCAF1Q9Y4B6 1507 aa17.16■□□□□ 0.34
LDB3-205ENST00000429277 TMC1Q8TDI8 760 aa17.14■□□□□ 0.34
LDB3-205ENST00000429277 WDR43Q15061 677 aaKnown RBP eCLIP17.13■□□□□ 0.33
LDB3-205ENST00000429277 FKBP8Q14318 412 aa17.13■□□□□ 0.33
LDB3-205ENST00000429277 FAM9BQ8IZU0 186 aa17.09■□□□□ 0.33
LDB3-205ENST00000429277 MTUS2Q5JR59 1369 aa17.09■□□□□ 0.33
LDB3-205ENST00000429277 DDX10Q13206 875 aaKnown RBP17.07■□□□□ 0.32
LDB3-205ENST00000429277 CCDC136Q96JN2 1154 aa17.07■□□□□ 0.32
LDB3-205ENST00000429277 ZCCHC6Q5VYS8 1495 aaKnown RBP17.04■□□□□ 0.32
LDB3-205ENST00000429277 MYH16Q9H6N6 1097 aa17.04■□□□□ 0.32
LDB3-205ENST00000429277 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.03■□□□□ 0.32
LDB3-205ENST00000429277 CHIC2Q9UKJ5 165 aa17■□□□□ 0.31
LDB3-205ENST00000429277 MRS2Q9HD23 443 aa17■□□□□ 0.31
LDB3-205ENST00000429277 RSF1Q96T23 1441 aaPredicted RBP17■□□□□ 0.31
LDB3-205ENST00000429277 CHMP7Q8WUX9 453 aaPredicted RBP16.99■□□□□ 0.31
LDB3-205ENST00000429277 EEA1Q15075 1411 aa16.99■□□□□ 0.31
LDB3-205ENST00000429277 GLIPR1L2Q4G1C9 344 aa16.97■□□□□ 0.31
LDB3-205ENST00000429277 EIF4G2P78344 907 aaKnown RBP eCLIP16.96■□□□□ 0.31
LDB3-205ENST00000429277 EIF5BO60841 1220 aaKnown RBP16.95■□□□□ 0.3
LDB3-205ENST00000429277 CLIP1P30622 1438 aa16.94■□□□□ 0.3
LDB3-205ENST00000429277 CDCA8Q53HL2 280 aa16.93■□□□□ 0.3
LDB3-205ENST00000429277 SALL2Q9Y467 1007 aaPredicted RBP16.92■□□□□ 0.3
LDB3-205ENST00000429277 ANP32EQ9BTT0 268 aa16.92■□□□□ 0.3
LDB3-205ENST00000429277 KDM2AQ9Y2K7 1162 aa16.91■□□□□ 0.3
LDB3-205ENST00000429277 PLPPR3Q6T4P5 718 aa16.9■□□□□ 0.3
LDB3-205ENST00000429277 CDK11BP21127 795 aaKnown RBP16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms