Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC11.02□□□□□ -0.65
CXCL1P09341 HJURP-202ENST00000411486 3187 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.65
CXCL1P09341 ZNF493-208ENST00000599461 1769 ntBASIC11.02□□□□□ -0.65
CXCL1P09341 C17orf53-202ENST00000319977 2725 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.65
CXCL1P09341 KIF9-208ENST00000452770 2707 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
CXCL1P09341 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
CXCL1P09341 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.65
CXCL1P09341 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
CXCL1P09341 POU2F2-202ENST00000389341 6901 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.65
CXCL1P09341 PRKAB1-206ENST00000541640 2303 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
CXCL1P09341 DYSF-206ENST00000409744 6564 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
CXCL1P09341 DYSF-209ENST00000410041 6594 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
CXCL1P09341 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC11.02□□□□□ -0.65
CXCL1P09341 TMEM136-202ENST00000375095 4143 ntAPPRIS P1 TSL 2 BASIC11.02□□□□□ -0.65
CXCL1P09341 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC11.02□□□□□ -0.65
CXCL1P09341 DCAF4-203ENST00000394234 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
CXCL1P09341 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
CXCL1P09341 NEK3-205ENST00000610828 2396 ntAPPRIS P2 TSL 1 (best) BASIC11.02□□□□□ -0.65
CXCL1P09341 CICP19-201ENST00000632944 2357 ntBASIC11.02□□□□□ -0.65
CXCL1P09341 SLC5A9-203ENST00000438567 3195 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.65
CXCL1P09341 CPT1C-203ENST00000392518 2910 ntAPPRIS P3 TSL 2 BASIC11.02□□□□□ -0.65
CXCL1P09341 GDAP2-201ENST00000369442 2436 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
CXCL1P09341 CTAGE13P-201ENST00000416709 2446 ntBASIC11.01□□□□□ -0.65
CXCL1P09341 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC11.01□□□□□ -0.65
CXCL1P09341 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
CXCL1P09341 LNP1-201ENST00000383693 2210 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CXCL1P09341 ADAM8-202ENST00000445355 3279 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
CXCL1P09341 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC11.01□□□□□ -0.65
CXCL1P09341 TUFT1-202ENST00000368848 3033 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
CXCL1P09341 CATSPERD-202ENST00000381624 2516 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CXCL1P09341 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
CXCL1P09341 SZRD1-201ENST00000401088 3636 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
CXCL1P09341 PXK-210ENST00000479241 2817 ntTSL 2 BASIC11.01□□□□□ -0.65
CXCL1P09341 ZBTB26-201ENST00000373654 2047 ntAPPRIS P1 TSL 2 BASIC11.01□□□□□ -0.65
CXCL1P09341 CYP4F12-215ENST00000550308 2044 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CXCL1P09341 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
CXCL1P09341 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
CXCL1P09341 TRO-202ENST00000319167 2326 ntAPPRIS ALT2 TSL 2 BASIC11.01□□□□□ -0.65
CXCL1P09341 TRO-203ENST00000375022 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
CXCL1P09341 TP53I11-220ENST00000533940 3703 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CXCL1P09341 LINC00523-206ENST00000556697 2071 ntTSL 2 BASIC11.01□□□□□ -0.65
CXCL1P09341 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC11.01□□□□□ -0.65
CXCL1P09341 OPLAH-204ENST00000618853 4031 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CXCL1P09341 IGSF11-202ENST00000393775 3495 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CXCL1P09341 ZSCAN2-202ENST00000327179 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CXCL1P09341 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC11.01□□□□□ -0.65
CXCL1P09341 ILF3-219ENST00000590261 3219 ntAPPRIS P3 TSL 5 BASIC11.01□□□□□ -0.65
CXCL1P09341 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CXCL1P09341 RAD18-204ENST00000418463 563 ntTSL 4 BASIC11.01□□□□□ -0.65
CXCL1P09341 RAD18-205ENST00000421052 582 ntTSL 3 BASIC11.01□□□□□ -0.65
CXCL1P09341 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
CXCL1P09341 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC11.01□□□□□ -0.65
CXCL1P09341 AK2P2-201ENST00000439142 405 ntBASIC11.01□□□□□ -0.65
CXCL1P09341 DNAJB3-201ENST00000446806 729 ntBASIC11.01□□□□□ -0.65
CXCL1P09341 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CXCL1P09341 SLBP-205ENST00000488267 987 ntTSL 2 BASIC11.01□□□□□ -0.65
CXCL1P09341 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC11.01□□□□□ -0.65
CXCL1P09341 KRT18P58-201ENST00000527480 1120 ntBASIC11.01□□□□□ -0.65
CXCL1P09341 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC11.01□□□□□ -0.65
CXCL1P09341 TIMM17BP1-201ENST00000545713 516 ntBASIC11.01□□□□□ -0.65
CXCL1P09341 DUX4L47-201ENST00000566374 394 ntBASIC11.01□□□□□ -0.65
CXCL1P09341 TEX28P1-201ENST00000613479 1221 ntBASIC11.01□□□□□ -0.65
CXCL1P09341 TEX28P2-201ENST00000617764 1221 ntBASIC11.01□□□□□ -0.65
CXCL1P09341 RAB34-223ENST00000636154 730 ntTSL 2 BASIC11.01□□□□□ -0.65
CXCL1P09341 DNASE1L1-205ENST00000369809 3008 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
CXCL1P09341 SARS-202ENST00000369923 1882 ntTSL 5 BASIC11.01□□□□□ -0.65
CXCL1P09341 C1QTNF9-202ENST00000382071 1854 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
CXCL1P09341 DGCR2-201ENST00000263196 4480 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CXCL1P09341 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
CXCL1P09341 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC11.01□□□□□ -0.65
CXCL1P09341 AL158070.2-201ENST00000623713 1621 ntBASIC11.01□□□□□ -0.65
CXCL1P09341 FBXW11-201ENST00000265094 4342 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
CXCL1P09341 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
CXCL1P09341 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
CXCL1P09341 IKZF1-202ENST00000343574 5925 ntTSL 5 BASIC11.01□□□□□ -0.65
CXCL1P09341 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
CXCL1P09341 CLTCL1-210ENST00000617926 1695 ntTSL 2 BASIC11.01□□□□□ -0.65
CXCL1P09341 PHF21B-203ENST00000403565 3586 ntTSL 2 BASIC11.01□□□□□ -0.65
CXCL1P09341 FILIP1L-203ENST00000383694 3280 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
CXCL1P09341 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CXCL1P09341 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC11.01□□□□□ -0.65
CXCL1P09341 DLGAP1-203ENST00000400147 5258 ntTSL 1 (best) BASIC11□□□□□ -0.65
CXCL1P09341 DLGAP1-206ENST00000400155 5257 ntTSL 2 BASIC11□□□□□ -0.65
CXCL1P09341 SETD1B-202ENST00000542440 8185 ntAPPRIS P2 TSL 5 BASIC11□□□□□ -0.65
CXCL1P09341 GPC4-201ENST00000370828 4960 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
CXCL1P09341 PAX8-205ENST00000429538 4084 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
CXCL1P09341 UNC93A-201ENST00000230256 2116 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
CXCL1P09341 SLC35B3-201ENST00000379660 2137 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
CXCL1P09341 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC11□□□□□ -0.65
CXCL1P09341 DLGAP1-202ENST00000400145 2188 ntTSL 1 (best) BASIC11□□□□□ -0.65
CXCL1P09341 DYNC1I2-204ENST00000409317 2196 ntTSL 5 BASIC11□□□□□ -0.65
CXCL1P09341 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
CXCL1P09341 ZNF287-202ENST00000395825 3208 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
CXCL1P09341 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
CXCL1P09341 FERMT2-201ENST00000341590 3338 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
CXCL1P09341 SIX4-201ENST00000216513 6285 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
CXCL1P09341 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
CXCL1P09341 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
CXCL1P09341 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC11□□□□□ -0.65
CXCL1P09341 CENPM-205ENST00000404067 905 ntTSL 3 BASIC11□□□□□ -0.65
Retrieved 100 of 98,524 protein–RNA pairs in 68.8 ms