Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC13.78□□□□□ -0.2
FOXA1P55317 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC13.78□□□□□ -0.2
FOXA1P55317 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA1P55317 JPT2-214ENST00000569765 782 ntTSL 2 BASIC13.78□□□□□ -0.2
FOXA1P55317 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA1P55317 TECR-220ENST00000600083 1204 ntTSL 2 BASIC13.78□□□□□ -0.2
FOXA1P55317 AC244157.2-201ENST00000616239 1006 ntBASIC13.78□□□□□ -0.2
FOXA1P55317 AL591471.1-201ENST00000621855 229 ntBASIC13.78□□□□□ -0.2
FOXA1P55317 LRP8-203ENST00000354412 2553 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA1P55317 MYOM3-201ENST00000338909 2693 ntTSL 2 BASIC13.78□□□□□ -0.2
FOXA1P55317 ALOX15B-202ENST00000380183 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA1P55317 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA1P55317 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC13.78□□□□□ -0.2
FOXA1P55317 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
FOXA1P55317 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA1P55317 AP002353.1-201ENST00000528257 1599 ntBASIC13.78□□□□□ -0.2
FOXA1P55317 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA1P55317 AL355102.3-201ENST00000554299 1678 ntBASIC13.78□□□□□ -0.2
FOXA1P55317 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC13.78□□□□□ -0.2
FOXA1P55317 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC13.78□□□□□ -0.2
FOXA1P55317 GTF2IRD2-201ENST00000451013 3558 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA1P55317 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA1P55317 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC13.78□□□□□ -0.2
FOXA1P55317 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA1P55317 PRAME-202ENST00000398743 2196 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA1P55317 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA1P55317 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA1P55317 SPATA12-201ENST00000334325 2413 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA1P55317 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC13.78□□□□□ -0.2
FOXA1P55317 NEK4-207ENST00000535191 2452 ntTSL 2 BASIC13.78□□□□□ -0.2
FOXA1P55317 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC13.77□□□□□ -0.2
FOXA1P55317 EGR2-201ENST00000242480 2968 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
FOXA1P55317 WDR81-205ENST00000437219 3184 ntTSL 2 BASIC13.77□□□□□ -0.2
FOXA1P55317 CYB5A-202ENST00000340533 3283 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
FOXA1P55317 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
FOXA1P55317 DDX31-202ENST00000372153 3285 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.2
FOXA1P55317 ABCB9-203ENST00000346530 3399 ntTSL 5 BASIC13.77□□□□□ -0.2
FOXA1P55317 LHX6-210ENST00000559895 3587 ntTSL 2 BASIC13.77□□□□□ -0.2
FOXA1P55317 OTUD4-201ENST00000447906 3829 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.2
FOXA1P55317 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
FOXA1P55317 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.2
FOXA1P55317 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA1P55317 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA1P55317 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA1P55317 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA1P55317 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC13.77□□□□□ -0.21
FOXA1P55317 TRAIP-201ENST00000331456 2028 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA1P55317 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
FOXA1P55317 PBXIP1-203ENST00000368465 3144 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
FOXA1P55317 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA1P55317 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC13.77□□□□□ -0.21
FOXA1P55317 SNCAIP-203ENST00000379538 2588 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA1P55317 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA1P55317 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA1P55317 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC13.77□□□□□ -0.21
FOXA1P55317 SHMT1P1-201ENST00000419974 1312 ntBASIC13.77□□□□□ -0.21
FOXA1P55317 AC079178.1-201ENST00000420915 656 ntBASIC13.77□□□□□ -0.21
FOXA1P55317 EFHC2-202ENST00000420999 2464 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA1P55317 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA1P55317 GSAP-205ENST00000430584 600 ntTSL 5 BASIC13.77□□□□□ -0.21
FOXA1P55317 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC13.77□□□□□ -0.21
FOXA1P55317 LINC01833-203ENST00000437916 2880 ntTSL 3 BASIC13.77□□□□□ -0.21
FOXA1P55317 PTCHD3-201ENST00000438700 2529 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA1P55317 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA1P55317 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
FOXA1P55317 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC13.77□□□□□ -0.21
FOXA1P55317 ALAS1-204ENST00000469224 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA1P55317 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC13.77□□□□□ -0.21
FOXA1P55317 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA1P55317 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC13.77□□□□□ -0.21
FOXA1P55317 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC13.77□□□□□ -0.21
FOXA1P55317 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC13.77□□□□□ -0.21
FOXA1P55317 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC13.77□□□□□ -0.21
FOXA1P55317 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA1P55317 AP002761.4-201ENST00000565433 3361 ntBASIC13.77□□□□□ -0.21
FOXA1P55317 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA1P55317 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC13.77□□□□□ -0.21
FOXA1P55317 CYGB-203ENST00000589145 788 ntTSL 3 BASIC13.77□□□□□ -0.21
FOXA1P55317 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC13.77□□□□□ -0.21
FOXA1P55317 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC13.77□□□□□ -0.21
FOXA1P55317 AL512343.1-201ENST00000605837 169 ntBASIC13.77□□□□□ -0.21
FOXA1P55317 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC13.77□□□□□ -0.21
FOXA1P55317 AC108024.1-201ENST00000626286 1721 ntBASIC13.77□□□□□ -0.21
FOXA1P55317 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA1P55317 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA1P55317 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA1P55317 ATXN2L-215ENST00000564304 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA1P55317 SDC1-202ENST00000381150 3291 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
FOXA1P55317 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA1P55317 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA1P55317 AC098936.1-201ENST00000442318 2885 ntTSL 2 BASIC13.77□□□□□ -0.21
FOXA1P55317 WHRN-201ENST00000265134 2847 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA1P55317 TMEM41A-203ENST00000421852 2827 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA1P55317 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA1P55317 MAGED4B-201ENST00000335504 2578 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA1P55317 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC13.77□□□□□ -0.21
FOXA1P55317 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC13.76□□□□□ -0.21
FOXA1P55317 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA1P55317 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC13.76□□□□□ -0.21
FOXA1P55317 CR383656.2-201ENST00000548656 2254 ntBASIC13.76□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 73.1 ms