Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 NSL1-201ENST00000366976 722 ntTSL 2 BASIC12.62□□□□□ -0.39
SOX2P48431 MGST3-203ENST00000367885 680 ntTSL 2 BASIC12.62□□□□□ -0.39
SOX2P48431 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
SOX2P48431 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
SOX2P48431 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SOX2P48431 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC12.62□□□□□ -0.39
SOX2P48431 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
SOX2P48431 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC12.62□□□□□ -0.39
SOX2P48431 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
SOX2P48431 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC12.62□□□□□ -0.39
SOX2P48431 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC12.62□□□□□ -0.39
SOX2P48431 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
SOX2P48431 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC12.62□□□□□ -0.39
SOX2P48431 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC12.62□□□□□ -0.39
SOX2P48431 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC12.62□□□□□ -0.39
SOX2P48431 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC12.62□□□□□ -0.39
SOX2P48431 COL16A1-202ENST00000373668 3643 ntTSL 2 BASIC12.62□□□□□ -0.39
SOX2P48431 NLRP2-204ENST00000391721 3420 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
SOX2P48431 AP2A2-202ENST00000448903 4575 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
SOX2P48431 GPHN-203ENST00000478722 4297 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
SOX2P48431 ARAF-201ENST00000290277 2504 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SOX2P48431 FBXL18-201ENST00000382368 3498 ntAPPRIS P2 TSL 5 BASIC12.62□□□□□ -0.39
SOX2P48431 ST5-256ENST00000534127 4545 ntAPPRIS P4 TSL 1 (best) BASIC12.62□□□□□ -0.39
SOX2P48431 TP73-207ENST00000378290 1831 ntTSL 2 BASIC12.62□□□□□ -0.39
SOX2P48431 TRAK1-201ENST00000327628 5293 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
SOX2P48431 XIRP1-203ENST00000421646 2596 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
SOX2P48431 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
SOX2P48431 NBEA-204ENST00000400445 11119 ntAPPRIS P2 TSL 5 BASIC12.62□□□□□ -0.39
SOX2P48431 SLC35F2-203ENST00000525071 3331 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
SOX2P48431 FAM212B-201ENST00000357260 5980 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SOX2P48431 UROC1-201ENST00000290868 3149 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SOX2P48431 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC12.61□□□□□ -0.39
SOX2P48431 SHC1-202ENST00000368445 3472 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SOX2P48431 SIRPA-203ENST00000400068 4201 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
SOX2P48431 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
SOX2P48431 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SOX2P48431 PPP2R1B-204ENST00000426998 1888 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
SOX2P48431 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC12.61□□□□□ -0.39
SOX2P48431 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC12.61□□□□□ -0.39
SOX2P48431 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SOX2P48431 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
SOX2P48431 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
SOX2P48431 FOXP3-204ENST00000455775 2448 ntTSL 5 BASIC12.61□□□□□ -0.39
SOX2P48431 PRKD1-201ENST00000331968 3726 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
SOX2P48431 RPS27L-201ENST00000330964 6434 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SOX2P48431 AL138709.1-201ENST00000614840 1693 ntBASIC12.61□□□□□ -0.39
SOX2P48431 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SOX2P48431 WASF3-202ENST00000361042 4823 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
SOX2P48431 ALPL-206ENST00000539907 2241 ntTSL 2 BASIC12.61□□□□□ -0.39
SOX2P48431 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
SOX2P48431 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC12.61□□□□□ -0.39
SOX2P48431 PIK3R5-220ENST00000623421 4318 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
SOX2P48431 GBF1-201ENST00000369983 6403 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SOX2P48431 TRPM4-201ENST00000252826 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SOX2P48431 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC12.61□□□□□ -0.39
SOX2P48431 NFATC1-203ENST00000329101 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
SOX2P48431 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SOX2P48431 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
SOX2P48431 BAATP1-201ENST00000412284 1225 ntBASIC12.61□□□□□ -0.39
SOX2P48431 PNKD-204ENST00000436005 978 ntTSL 5 BASIC12.61□□□□□ -0.39
SOX2P48431 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC12.61□□□□□ -0.39
SOX2P48431 AC011495.1-201ENST00000498085 584 ntBASIC12.61□□□□□ -0.39
SOX2P48431 RNA5SP421-201ENST00000516864 134 ntBASIC12.61□□□□□ -0.39
SOX2P48431 IGHVIII-5-2-201ENST00000522505 261 ntBASIC12.61□□□□□ -0.39
SOX2P48431 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC12.61□□□□□ -0.39
SOX2P48431 AC106820.3-201ENST00000561653 397 ntBASIC12.61□□□□□ -0.39
SOX2P48431 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC12.61□□□□□ -0.39
SOX2P48431 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC12.61□□□□□ -0.39
SOX2P48431 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC12.61□□□□□ -0.39
SOX2P48431 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC12.61□□□□□ -0.39
SOX2P48431 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
SOX2P48431 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC12.61□□□□□ -0.39
SOX2P48431 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC12.61□□□□□ -0.39
SOX2P48431 ABBA01031660.1-201ENST00000635219 756 ntBASIC12.61□□□□□ -0.39
SOX2P48431 AC002472.3-201ENST00000640124 621 ntBASIC12.61□□□□□ -0.39
SOX2P48431 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SOX2P48431 LCA5-202ENST00000392959 4719 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SOX2P48431 LIMK1-208ENST00000538333 2170 ntTSL 2 BASIC12.61□□□□□ -0.39
SOX2P48431 MKS1-201ENST00000313863 2091 ntTSL 5 BASIC12.61□□□□□ -0.39
SOX2P48431 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC12.61□□□□□ -0.39
SOX2P48431 INCENP-201ENST00000278849 3698 ntAPPRIS P3 TSL 5 BASIC12.61□□□□□ -0.39
SOX2P48431 UQCRFS1-201ENST00000304863 3475 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SOX2P48431 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
SOX2P48431 SETD1B-202ENST00000542440 8185 ntAPPRIS P2 TSL 5 BASIC12.61□□□□□ -0.39
SOX2P48431 RAB15-201ENST00000267512 3391 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
SOX2P48431 MAGED4B-201ENST00000335504 2578 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
SOX2P48431 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC12.61□□□□□ -0.39
SOX2P48431 C1orf167-202ENST00000433342 4545 ntAPPRIS P5 TSL 5 BASIC12.61□□□□□ -0.39
SOX2P48431 CACNA1G-222ENST00000510366 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
SOX2P48431 CACNA1G-227ENST00000513964 6735 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
SOX2P48431 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC12.61□□□□□ -0.39
SOX2P48431 RABGEF1-210ENST00000437078 4319 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
SOX2P48431 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC12.61□□□□□ -0.39
SOX2P48431 UNC13B-206ENST00000617908 6432 ntTSL 5 BASIC12.61□□□□□ -0.39
SOX2P48431 UNC13B-207ENST00000619578 6426 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
SOX2P48431 BDNF-208ENST00000418212 4125 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SOX2P48431 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SOX2P48431 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SOX2P48431 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC12.6□□□□□ -0.39
SOX2P48431 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms