RNA–Protein interactions for RNA: ENST00000392959.5

LCA5-202, Transcript of LCA5, lebercilin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LCA5, Length 4,719 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LCA5-202ENST00000392959 DCAF8L2P0C7V8 631 aa22.4■■□□□ 1.18
LCA5-202ENST00000392959 SUPT5HO00267 1087 aaKnown RBP21.61■■□□□ 1.05
LCA5-202ENST00000392959 NISCHQ9Y2I1 1504 aa21.37■■□□□ 1.01
LCA5-202ENST00000392959 SHROOM4Q9ULL8 1493 aa21.09■□□□□ 0.97
LCA5-202ENST00000392959 EHMT2Q96KQ7 1210 aa20.83■□□□□ 0.93
LCA5-202ENST00000392959 PELP1Q8IZL8 1130 aaKnown RBP20.75■□□□□ 0.91
LCA5-202ENST00000392959 APLP2Q06481 763 aa20.48■□□□□ 0.87
LCA5-202ENST00000392959 PCGF6Q9BYE7 350 aa20.48■□□□□ 0.87
LCA5-202ENST00000392959 FAM9AQ8IZU1 332 aaPredicted RBP20.38■□□□□ 0.85
LCA5-202ENST00000392959 TTBK1Q5TCY1 1321 aaPredicted RBP20.19■□□□□ 0.82
LCA5-202ENST00000392959 CENPBP07199 599 aaPredicted RBP20.15■□□□□ 0.82
LCA5-202ENST00000392959 ZEB1P37275 1124 aaPredicted RBP20.15■□□□□ 0.82
LCA5-202ENST00000392959 CCER1Q8TC90 406 aaPredicted RBP20.02■□□□□ 0.79
LCA5-202ENST00000392959 TRIM41Q8WV44 630 aa19.99■□□□□ 0.79
LCA5-202ENST00000392959 ERICH6Q7L0X2 663 aa19.86■□□□□ 0.77
LCA5-202ENST00000392959 RANGAP1P46060 587 aaPredicted RBP19.84■□□□□ 0.77
LCA5-202ENST00000392959 UBTFP17480 764 aaKnown RBP19.72■□□□□ 0.75
LCA5-202ENST00000392959 YTHDC1Q96MU7 727 aaKnown RBP19.64■□□□□ 0.73
LCA5-202ENST00000392959 ATP1B4Q9UN42 357 aaPredicted RBP19.63■□□□□ 0.73
LCA5-202ENST00000392959 MYT1Q01538 1121 aa19.62■□□□□ 0.73
LCA5-202ENST00000392959 NEFLP07196 543 aa19.62■□□□□ 0.73
LCA5-202ENST00000392959 TRIM26Q12899 539 aaPredicted RBP19.57■□□□□ 0.72
LCA5-202ENST00000392959 HRCP23327 699 aa19.55■□□□□ 0.72
LCA5-202ENST00000392959 PPARGC1BQ86YN6 1023 aaKnown RBP19.52■□□□□ 0.71
LCA5-202ENST00000392959 CHIC1Q5VXU3 224 aa19.3■□□□□ 0.68
LCA5-202ENST00000392959 LOC105371045A0A1W2PR82 267 aa19.29■□□□□ 0.68
LCA5-202ENST00000392959 ITGAEP38570 1179 aa19.13■□□□□ 0.65
LCA5-202ENST00000392959 HNRNPUL2Q1KMD3 747 aaKnown RBP19.1■□□□□ 0.65
LCA5-202ENST00000392959 DAXXQ9UER7 740 aaPredicted RBP18.98■□□□□ 0.63
LCA5-202ENST00000392959 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.96■□□□□ 0.63
LCA5-202ENST00000392959 POLR3GLQ9BT43 218 aa18.96■□□□□ 0.63
LCA5-202ENST00000392959 DIEXFQ68CQ4 756 aaKnown RBP18.96■□□□□ 0.63
LCA5-202ENST00000392959 CNGB1Q14028 1251 aaPredicted RBP18.82■□□□□ 0.6
LCA5-202ENST00000392959 MYT1LQ9UL68 1186 aa18.72■□□□□ 0.59
LCA5-202ENST00000392959 RTL5Q5HYW3 569 aaPredicted RBP18.67■□□□□ 0.58
LCA5-202ENST00000392959 GTF3C3Q9Y5Q9 886 aa18.67■□□□□ 0.58
LCA5-202ENST00000392959 FAM50AQ14320 339 aaKnown RBP18.6■□□□□ 0.57
LCA5-202ENST00000392959 CLSPNQ9HAW4 1339 aa18.55■□□□□ 0.56
LCA5-202ENST00000392959 ZNF316A6NFI3 1004 aaPredicted RBP18.54■□□□□ 0.56
LCA5-202ENST00000392959 BCANQ96GW7 911 aa18.53■□□□□ 0.56
LCA5-202ENST00000392959 NEUROD1Q13562 356 aa18.52■□□□□ 0.56
LCA5-202ENST00000392959 TRIM52Q96A61 297 aa18.49■□□□□ 0.55
LCA5-202ENST00000392959 SLC4A1APQ9BWU0 796 aaKnown RBP18.48■□□□□ 0.55
LCA5-202ENST00000392959 ANP32CO43423 234 aa18.46■□□□□ 0.55
LCA5-202ENST00000392959 ACIN1Q9UKV3 1341 aaKnown RBP18.42■□□□□ 0.54
LCA5-202ENST00000392959 CDK11AQ9UQ88 783 aaPredicted RBP18.4■□□□□ 0.54
LCA5-202ENST00000392959 ZNF326Q5BKZ1 582 aaKnown RBP18.29■□□□□ 0.52
LCA5-202ENST00000392959 PABPN1Q86U42 306 aaKnown RBP eCLIP18.28■□□□□ 0.52
LCA5-202ENST00000392959 CSRNP3Q8WYN3 585 aa18.24■□□□□ 0.51
LCA5-202ENST00000392959 ABCC9O60706 1549 aa18.19■□□□□ 0.5
LCA5-202ENST00000392959 ZBTB47Q9UFB7 747 aaPredicted RBP18.1■□□□□ 0.49
LCA5-202ENST00000392959 ANP32AP39687 249 aaKnown RBP18.09■□□□□ 0.49
LCA5-202ENST00000392959 P3H3Q8IVL6 736 aa18.07■□□□□ 0.48
LCA5-202ENST00000392959 CANXP27824 592 aaKnown RBP18.06■□□□□ 0.48
LCA5-202ENST00000392959 DCAF1Q9Y4B6 1507 aa18.04■□□□□ 0.48
LCA5-202ENST00000392959 FKBP8Q14318 412 aa18.04■□□□□ 0.48
LCA5-202ENST00000392959 FBLN2P98095 1184 aa17.97■□□□□ 0.47
LCA5-202ENST00000392959 NPM2Q86SE8 214 aaKnown RBP17.96■□□□□ 0.47
LCA5-202ENST00000392959 ARID3CA6NKF2 412 aa17.95■□□□□ 0.46
LCA5-202ENST00000392959 HNRNPUQ00839 825 aaKnown RBP eCLIP17.94■□□□□ 0.46
LCA5-202ENST00000392959 DDX10Q13206 875 aaKnown RBP17.94■□□□□ 0.46
LCA5-202ENST00000392959 TONSLQ96HA7 1378 aa17.94■□□□□ 0.46
LCA5-202ENST00000392959 BCL11AQ9H165 835 aa17.93■□□□□ 0.46
LCA5-202ENST00000392959 NEFMP07197 916 aa17.92■□□□□ 0.46
LCA5-202ENST00000392959 ZNF777Q9ULD5 760 aaPredicted RBP17.88■□□□□ 0.45
LCA5-202ENST00000392959 FAM9BQ8IZU0 186 aa17.84■□□□□ 0.45
LCA5-202ENST00000392959 SCAF1Q9H7N4 1312 aaKnown RBP17.83■□□□□ 0.45
LCA5-202ENST00000392959 SLC24A1O60721 1099 aa17.81■□□□□ 0.44
LCA5-202ENST00000392959 MIER1Q8N108 512 aa17.78■□□□□ 0.44
LCA5-202ENST00000392959 EIF5BO60841 1220 aaKnown RBP17.77■□□□□ 0.44
LCA5-202ENST00000392959 CCDC136Q96JN2 1154 aa17.76■□□□□ 0.43
LCA5-202ENST00000392959 UPF2Q9HAU5 1272 aaKnown RBP17.73■□□□□ 0.43
LCA5-202ENST00000392959 SALL2Q9Y467 1007 aaPredicted RBP17.72■□□□□ 0.43
LCA5-202ENST00000392959 TMC1Q8TDI8 760 aa17.72■□□□□ 0.43
LCA5-202ENST00000392959 ANP32BQ92688 251 aaKnown RBP17.71■□□□□ 0.43
LCA5-202ENST00000392959 HSP90AA1P07900 732 aaKnown RBP17.7■□□□□ 0.42
LCA5-202ENST00000392959 ZCCHC6Q5VYS8 1495 aaKnown RBP17.69■□□□□ 0.42
LCA5-202ENST00000392959 MRS2Q9HD23 443 aa17.69■□□□□ 0.42
LCA5-202ENST00000392959 SCRIBQ14160 1630 aa17.66■□□□□ 0.42
LCA5-202ENST00000392959 CHIC2Q9UKJ5 165 aa17.66■□□□□ 0.42
LCA5-202ENST00000392959 NBR1Q14596 966 aa17.66■□□□□ 0.42
LCA5-202ENST00000392959 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.62■□□□□ 0.41
LCA5-202ENST00000392959 IRX6P78412 446 aaPredicted RBP17.6■□□□□ 0.41
LCA5-202ENST00000392959 CHGAP10645 457 aaKnown RBP17.6■□□□□ 0.41
LCA5-202ENST00000392959 HIRIP3Q9BW71 556 aaPredicted RBP17.59■□□□□ 0.41
LCA5-202ENST00000392959 CLIP1P30622 1438 aa17.57■□□□□ 0.4
LCA5-202ENST00000392959 WDR43Q15061 677 aaKnown RBP eCLIP17.55■□□□□ 0.4
LCA5-202ENST00000392959 EIF4G2P78344 907 aaKnown RBP eCLIP17.54■□□□□ 0.4
LCA5-202ENST00000392959 MTUS2Q5JR59 1369 aa17.54■□□□□ 0.4
LCA5-202ENST00000392959 MYO15BQ96JP2 1530 aa17.53■□□□□ 0.4
LCA5-202ENST00000392959 KDM2AQ9Y2K7 1162 aa17.52■□□□□ 0.39
LCA5-202ENST00000392959 TSPY4P0CV99 314 aa17.5■□□□□ 0.39
LCA5-202ENST00000392959 TSPY10P0CW01 314 aa17.5■□□□□ 0.39
LCA5-202ENST00000392959 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.5■□□□□ 0.39
LCA5-202ENST00000392959 GLIPR1L2Q4G1C9 344 aa17.49■□□□□ 0.39
LCA5-202ENST00000392959 STAG3Q9UJ98 1225 aa17.48■□□□□ 0.39
LCA5-202ENST00000392959 ARXQ96QS3 562 aa17.46■□□□□ 0.39
LCA5-202ENST00000392959 ESF1Q9H501 851 aaKnown RBP17.46■□□□□ 0.39
LCA5-202ENST00000392959 CEP162Q5TB80 1403 aa17.44■□□□□ 0.38
LCA5-202ENST00000392959 EEA1Q15075 1411 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms