Protein–RNA interactions for Protein: Q9BYV6

TRIM55, Tripartite motif-containing protein 55, humanhuman

Predictions only

Length 548 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55Q9BYV6 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 AGER-214ENST00000538695 487 ntTSL 2 BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 AP001063.1-201ENST00000568332 529 ntBASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 AC010328.2-201ENST00000597698 1111 ntBASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 INTS5-201ENST00000330574 3285 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 SETD1B-202ENST00000542440 8185 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 BEND7-201ENST00000341083 2239 ntAPPRIS P3 TSL 2 BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 MGRN1-203ENST00000415496 6405 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 FAM122C-203ENST00000414371 2119 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 SLC9A8-201ENST00000361573 6094 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 DDX31-202ENST00000372153 3285 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
TRIM55Q9BYV6 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
TRIM55Q9BYV6 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
TRIM55Q9BYV6 TRPV1-206ENST00000571088 4105 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
TRIM55Q9BYV6 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC14.52□□□□□ -0.08
TRIM55Q9BYV6 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC14.52□□□□□ -0.08
TRIM55Q9BYV6 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
TRIM55Q9BYV6 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
TRIM55Q9BYV6 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
TRIM55Q9BYV6 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
TRIM55Q9BYV6 NME1-209ENST00000511355 1645 ntTSL 5 BASIC14.52□□□□□ -0.08
TRIM55Q9BYV6 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC14.52□□□□□ -0.08
TRIM55Q9BYV6 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC14.52□□□□□ -0.08
TRIM55Q9BYV6 TCF3-201ENST00000262965 4451 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
TRIM55Q9BYV6 METAP1D-201ENST00000315796 3419 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
TRIM55Q9BYV6 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
TRIM55Q9BYV6 FUT1-201ENST00000310160 4246 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
TRIM55Q9BYV6 SF3A1-201ENST00000215793 5143 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
TRIM55Q9BYV6 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
TRIM55Q9BYV6 SYK-203ENST00000375751 4936 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
TRIM55Q9BYV6 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
TRIM55Q9BYV6 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC14.52□□□□□ -0.08
TRIM55Q9BYV6 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
TRIM55Q9BYV6 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
TRIM55Q9BYV6 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
TRIM55Q9BYV6 MPRIP-202ENST00000341712 3846 ntAPPRIS P3 TSL 5 BASIC14.52□□□□□ -0.09
TRIM55Q9BYV6 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC14.52□□□□□ -0.09
TRIM55Q9BYV6 IL1RAPL2-202ENST00000372582 2985 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
TRIM55Q9BYV6 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
TRIM55Q9BYV6 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
TRIM55Q9BYV6 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC14.52□□□□□ -0.09
TRIM55Q9BYV6 EIF4G1-219ENST00000435046 4668 ntTSL 5 BASIC14.52□□□□□ -0.09
TRIM55Q9BYV6 YBX1P6-201ENST00000442962 1002 ntBASIC14.52□□□□□ -0.09
TRIM55Q9BYV6 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.09
TRIM55Q9BYV6 RPL13AP20-201ENST00000459725 609 ntBASIC14.52□□□□□ -0.09
TRIM55Q9BYV6 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC14.52□□□□□ -0.09
TRIM55Q9BYV6 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
TRIM55Q9BYV6 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC14.52□□□□□ -0.09
TRIM55Q9BYV6 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC14.52□□□□□ -0.09
TRIM55Q9BYV6 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC14.52□□□□□ -0.09
TRIM55Q9BYV6 ATF5-205ENST00000600336 682 ntTSL 2 BASIC14.52□□□□□ -0.09
TRIM55Q9BYV6 TJAP1-208ENST00000438588 2716 ntTSL 5 BASIC14.52□□□□□ -0.09
TRIM55Q9BYV6 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC14.52□□□□□ -0.09
TRIM55Q9BYV6 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
TRIM55Q9BYV6 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
TRIM55Q9BYV6 FOXP3-204ENST00000455775 2448 ntTSL 5 BASIC14.52□□□□□ -0.09
TRIM55Q9BYV6 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC14.52□□□□□ -0.09
TRIM55Q9BYV6 CX3CL1-204ENST00000565912 5796 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
TRIM55Q9BYV6 SGMS1-202ENST00000361781 3744 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
TRIM55Q9BYV6 PRDM15-207ENST00000447207 4928 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
TRIM55Q9BYV6 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
TRIM55Q9BYV6 OSBPL2-201ENST00000313733 4009 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 STRCP1-201ENST00000509801 5328 ntBASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 TMEM25-204ENST00000359862 2395 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 CSF2RB-203ENST00000406230 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 ZBTB12BP-201ENST00000314232 1122 ntBASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 KRT90P-201ENST00000549264 1064 ntBASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 GNRHR2-203ENST00000581100 1187 ntBASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 C16orf82-201ENST00000418886 2268 ntAPPRIS ALT2 BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 MIR9-3HG-201ENST00000536780 4778 ntTSL 3 BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 THAP2-201ENST00000308086 5719 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 MMP14-201ENST00000311852 3732 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms