Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
BDNFP23560 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
BDNFP23560 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC15.01□□□□□ -0.01
BDNFP23560 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC15.01□□□□□ -0.01
BDNFP23560 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC15.01□□□□□ -0.01
BDNFP23560 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC15.01□□□□□ -0.01
BDNFP23560 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
BDNFP23560 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
BDNFP23560 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
BDNFP23560 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
BDNFP23560 USP39-220ENST00000613444 2161 ntTSL 2 BASIC15.01□□□□□ -0.01
BDNFP23560 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
BDNFP23560 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
BDNFP23560 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
BDNFP23560 USP4-203ENST00000415188 1454 ntTSL 3 BASIC15.01□□□□□ -0.01
BDNFP23560 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
BDNFP23560 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC15.01□□□□□ -0.01
BDNFP23560 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
BDNFP23560 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
BDNFP23560 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC15□□□□□ -0.01
BDNFP23560 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
BDNFP23560 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
BDNFP23560 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC15□□□□□ -0.01
BDNFP23560 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC15□□□□□ -0.01
BDNFP23560 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
BDNFP23560 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
BDNFP23560 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
BDNFP23560 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC15□□□□□ -0.01
BDNFP23560 AC074138.1-201ENST00000611182 1303 ntBASIC15□□□□□ -0.01
BDNFP23560 NAA60-214ENST00000572584 2450 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
BDNFP23560 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC15□□□□□ -0.01
BDNFP23560 API5-208ENST00000531273 1868 ntTSL 2 BASIC15□□□□□ -0.01
BDNFP23560 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC15□□□□□ -0.01
BDNFP23560 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC15□□□□□ -0.01
BDNFP23560 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
BDNFP23560 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC15□□□□□ -0.01
BDNFP23560 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
BDNFP23560 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
BDNFP23560 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC15□□□□□ -0.01
BDNFP23560 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC15□□□□□ -0.01
BDNFP23560 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
BDNFP23560 HMGA1P1-201ENST00000415560 1062 ntBASIC15□□□□□ -0.01
BDNFP23560 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC15□□□□□ -0.01
BDNFP23560 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC15□□□□□ -0.01
BDNFP23560 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC15□□□□□ -0.01
BDNFP23560 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC15□□□□□ -0.01
BDNFP23560 RPL18AP8-201ENST00000486071 528 ntBASIC15□□□□□ -0.01
BDNFP23560 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC15□□□□□ -0.01
BDNFP23560 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
BDNFP23560 TPM1-223ENST00000560445 485 ntTSL 3 BASIC15□□□□□ -0.01
BDNFP23560 NDUFB10P1-201ENST00000567319 521 ntBASIC15□□□□□ -0.01
BDNFP23560 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
BDNFP23560 MIR4706-201ENST00000582134 82 ntBASIC15□□□□□ -0.01
BDNFP23560 RN7SL190P-201ENST00000582519 257 ntBASIC15□□□□□ -0.01
BDNFP23560 AL133467.4-201ENST00000602953 725 ntBASIC15□□□□□ -0.01
BDNFP23560 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC15□□□□□ -0.01
BDNFP23560 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
BDNFP23560 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC15□□□□□ -0.01
BDNFP23560 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
BDNFP23560 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC15□□□□□ -0.01
BDNFP23560 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC15□□□□□ -0.01
BDNFP23560 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
BDNFP23560 SPDYE16-203ENST00000633306 2591 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
BDNFP23560 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC15□□□□□ -0.01
BDNFP23560 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
BDNFP23560 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
BDNFP23560 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
BDNFP23560 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
BDNFP23560 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC15□□□□□ -0.01
BDNFP23560 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
BDNFP23560 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
BDNFP23560 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC15□□□□□ -0.01
BDNFP23560 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC15□□□□□ -0.01
BDNFP23560 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
BDNFP23560 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
BDNFP23560 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC15□□□□□ -0.01
BDNFP23560 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC15□□□□□ -0.01
BDNFP23560 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
BDNFP23560 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
BDNFP23560 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC14.99□□□□□ -0.01
BDNFP23560 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
BDNFP23560 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
BDNFP23560 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
BDNFP23560 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC14.99□□□□□ -0.01
BDNFP23560 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
BDNFP23560 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
BDNFP23560 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
BDNFP23560 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
BDNFP23560 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
BDNFP23560 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC14.99□□□□□ -0.01
BDNFP23560 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
BDNFP23560 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC14.99□□□□□ -0.01
BDNFP23560 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
BDNFP23560 AC027601.5-201ENST00000624065 2482 ntBASIC14.99□□□□□ -0.01
BDNFP23560 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
BDNFP23560 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
BDNFP23560 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
BDNFP23560 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC14.99□□□□□ -0.01
BDNFP23560 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC14.99□□□□□ -0.01
BDNFP23560 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC14.99□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms