Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC11.09□□□□□ -0.63
CXCL1P09341 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC11.09□□□□□ -0.63
CXCL1P09341 GAPDHP40-201ENST00000505218 1006 ntBASIC11.09□□□□□ -0.63
CXCL1P09341 NMU-202ENST00000505262 693 ntTSL 3 BASIC11.09□□□□□ -0.63
CXCL1P09341 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CXCL1P09341 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC11.09□□□□□ -0.63
CXCL1P09341 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC11.09□□□□□ -0.63
CXCL1P09341 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
CXCL1P09341 PUS1-205ENST00000535067 838 ntTSL 3 BASIC11.09□□□□□ -0.63
CXCL1P09341 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC11.09□□□□□ -0.63
CXCL1P09341 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC11.09□□□□□ -0.63
CXCL1P09341 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC11.09□□□□□ -0.63
CXCL1P09341 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC11.09□□□□□ -0.63
CXCL1P09341 AC092364.2-202ENST00000597012 1073 ntBASIC11.09□□□□□ -0.63
CXCL1P09341 LINC01115-203ENST00000606068 577 ntBASIC11.09□□□□□ -0.63
CXCL1P09341 GPER1-207ENST00000619052 571 ntTSL 2 BASIC11.09□□□□□ -0.63
CXCL1P09341 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC11.09□□□□□ -0.63
CXCL1P09341 CX3CL1-204ENST00000565912 5796 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
CXCL1P09341 ATXN10-201ENST00000252934 3329 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CXCL1P09341 CCDC97-201ENST00000269967 3322 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CXCL1P09341 ABL2-210ENST00000511413 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
CXCL1P09341 MOB3C-201ENST00000271139 2800 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
CXCL1P09341 CSAD-201ENST00000267085 2645 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
CXCL1P09341 SETD4-207ENST00000399215 4272 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
CXCL1P09341 AC008806.1-201ENST00000624962 2443 ntBASIC11.09□□□□□ -0.63
CXCL1P09341 ORMDL2-201ENST00000243045 2141 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CXCL1P09341 EFHD1-203ENST00000409708 1817 ntTSL 2 BASIC11.09□□□□□ -0.63
CXCL1P09341 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CXCL1P09341 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
CXCL1P09341 BAIAP3-204ENST00000426824 3930 ntAPPRIS ALT2 TSL 2 BASIC11.09□□□□□ -0.63
CXCL1P09341 NR1D1-201ENST00000246672 2772 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CXCL1P09341 CPT1C-217ENST00000598293 2767 ntAPPRIS P3 TSL 2 BASIC11.09□□□□□ -0.63
CXCL1P09341 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC11.09□□□□□ -0.63
CXCL1P09341 CTNNB1-201ENST00000349496 3737 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CXCL1P09341 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CXCL1P09341 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC11.09□□□□□ -0.63
CXCL1P09341 EFHC2-202ENST00000420999 2464 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CXCL1P09341 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CXCL1P09341 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
CXCL1P09341 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC11.09□□□□□ -0.63
CXCL1P09341 WIPF3-201ENST00000242140 4184 ntAPPRIS P2 TSL 5 BASIC11.09□□□□□ -0.63
CXCL1P09341 GRM8-201ENST00000339582 4057 ntAPPRIS P3 TSL 5 BASIC11.09□□□□□ -0.63
CXCL1P09341 AC093525.8-201ENST00000624099 1342 ntBASIC11.09□□□□□ -0.63
CXCL1P09341 SYNRG-229ENST00000621136 4841 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
CXCL1P09341 DUOX2-205ENST00000603300 6345 ntAPPRIS P2 TSL 1 (best) BASIC11.08□□□□□ -0.63
CXCL1P09341 DHX30-206ENST00000446256 3660 ntAPPRIS P2 TSL 2 BASIC11.08□□□□□ -0.63
CXCL1P09341 TMEM26-202ENST00000399298 5151 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.63
CXCL1P09341 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
CXCL1P09341 MFSD11-201ENST00000336509 2538 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CXCL1P09341 SLC45A2-201ENST00000296589 1772 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CXCL1P09341 SPATA12-201ENST00000334325 2413 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CXCL1P09341 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
CXCL1P09341 SLC23A1-202ENST00000353963 2303 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CXCL1P09341 RBM4-205ENST00000409406 2321 ntAPPRIS P1 TSL 2 BASIC11.08□□□□□ -0.64
CXCL1P09341 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CXCL1P09341 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC11.08□□□□□ -0.64
CXCL1P09341 UHMK1-203ENST00000538489 8446 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
CXCL1P09341 LAMB1-201ENST00000222399 5725 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CXCL1P09341 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
CXCL1P09341 GRIK1-206ENST00000399913 3234 ntTSL 2 BASIC11.08□□□□□ -0.64
CXCL1P09341 PYGO2-202ENST00000368457 3146 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CXCL1P09341 DYSF-202ENST00000394120 6543 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
CXCL1P09341 PHF19-202ENST00000373896 4241 ntAPPRIS P1 TSL 2 BASIC11.08□□□□□ -0.64
CXCL1P09341 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CXCL1P09341 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
CXCL1P09341 HSPA6-201ENST00000309758 2371 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
CXCL1P09341 HERC2P10-201ENST00000570209 2393 ntBASIC11.08□□□□□ -0.64
CXCL1P09341 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC11.08□□□□□ -0.64
CXCL1P09341 ASB2-203ENST00000555019 2842 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CXCL1P09341 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CXCL1P09341 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
CXCL1P09341 STOM-202ENST00000347359 870 ntTSL 2 BASIC11.08□□□□□ -0.64
CXCL1P09341 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
CXCL1P09341 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC11.08□□□□□ -0.64
CXCL1P09341 PMP22-202ENST00000395936 816 ntTSL 3 BASIC11.08□□□□□ -0.64
CXCL1P09341 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
CXCL1P09341 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
CXCL1P09341 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC11.08□□□□□ -0.64
CXCL1P09341 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
CXCL1P09341 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC11.08□□□□□ -0.64
CXCL1P09341 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC11.08□□□□□ -0.64
CXCL1P09341 HLA-V-204ENST00000476601 1289 ntBASIC11.08□□□□□ -0.64
CXCL1P09341 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC11.08□□□□□ -0.64
CXCL1P09341 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC11.08□□□□□ -0.64
CXCL1P09341 SDHAP3-202ENST00000515467 728 ntBASIC11.08□□□□□ -0.64
CXCL1P09341 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
CXCL1P09341 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC11.08□□□□□ -0.64
CXCL1P09341 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC11.08□□□□□ -0.64
CXCL1P09341 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC11.08□□□□□ -0.64
CXCL1P09341 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC11.08□□□□□ -0.64
CXCL1P09341 AP001059.3-201ENST00000619053 235 ntBASIC11.08□□□□□ -0.64
CXCL1P09341 AC009093.7-201ENST00000623853 1223 ntBASIC11.08□□□□□ -0.64
CXCL1P09341 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC11.08□□□□□ -0.64
CXCL1P09341 RAB34-224ENST00000636513 888 ntTSL 5 BASIC11.08□□□□□ -0.64
CXCL1P09341 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
CXCL1P09341 FUT8-203ENST00000360689 5166 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CXCL1P09341 ZNF263-202ENST00000538765 1721 ntTSL 2 BASIC11.08□□□□□ -0.64
CXCL1P09341 PAX3-205ENST00000392069 3170 ntTSL 5 BASIC11.08□□□□□ -0.64
CXCL1P09341 MCL1-204ENST00000620947 3626 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
CXCL1P09341 PER1-211ENST00000581082 4521 ntTSL 5 BASIC11.08□□□□□ -0.64
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms