Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 PDE9A-201ENST00000291539 2058 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
MRE11P49959 NEK4-207ENST00000535191 2452 ntTSL 2 BASIC16.8■□□□□ 0.28
MRE11P49959 ZNF419-202ENST00000347466 3654 ntAPPRIS P3 TSL 2 BASIC16.8■□□□□ 0.28
MRE11P49959 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC16.8■□□□□ 0.28
MRE11P49959 MED6-201ENST00000256379 1995 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
MRE11P49959 IFT172-203ENST00000416524 1982 ntTSL 2 BASIC16.8■□□□□ 0.28
MRE11P49959 TMEM57-201ENST00000374343 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MRE11P49959 SLC4A2-201ENST00000392826 3947 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
MRE11P49959 BCCIP-202ENST00000299130 2337 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
MRE11P49959 GPR35-205ENST00000438013 3821 ntAPPRIS P3 BASIC16.8■□□□□ 0.28
MRE11P49959 MAP7D3-201ENST00000316077 4567 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
MRE11P49959 ASS1-203ENST00000372393 1548 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
MRE11P49959 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
MRE11P49959 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MRE11P49959 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MRE11P49959 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC16.79■□□□□ 0.28
MRE11P49959 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
MRE11P49959 FAM212B-AS1-201ENST00000430373 2131 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MRE11P49959 LINC01019-201ENST00000505443 3199 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MRE11P49959 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC16.79■□□□□ 0.28
MRE11P49959 GTF2IRD1P1-202ENST00000457166 2426 ntTSL 2 BASIC16.79■□□□□ 0.28
MRE11P49959 NHEJ1-201ENST00000356853 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MRE11P49959 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
MRE11P49959 C1orf109-201ENST00000358011 2355 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
MRE11P49959 PRAM1-201ENST00000423345 2667 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MRE11P49959 HECTD1-219ENST00000611816 8980 ntTSL 5 BASIC16.79■□□□□ 0.28
MRE11P49959 OPN4-201ENST00000241891 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MRE11P49959 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MRE11P49959 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
MRE11P49959 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
MRE11P49959 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MRE11P49959 SPDYE19P-201ENST00000338590 713 ntBASIC16.79■□□□□ 0.28
MRE11P49959 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC16.79■□□□□ 0.28
MRE11P49959 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC16.79■□□□□ 0.28
MRE11P49959 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
MRE11P49959 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC16.79■□□□□ 0.28
MRE11P49959 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MRE11P49959 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC16.79■□□□□ 0.28
MRE11P49959 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC16.79■□□□□ 0.28
MRE11P49959 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC16.79■□□□□ 0.28
MRE11P49959 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC16.79■□□□□ 0.28
MRE11P49959 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC16.79■□□□□ 0.28
MRE11P49959 AL844908.2-201ENST00000609461 460 ntBASIC16.79■□□□□ 0.28
MRE11P49959 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC16.79■□□□□ 0.28
MRE11P49959 AC018529.1-201ENST00000613063 361 ntBASIC16.79■□□□□ 0.28
MRE11P49959 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MRE11P49959 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
MRE11P49959 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
MRE11P49959 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MRE11P49959 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
MRE11P49959 PHF21B-201ENST00000313237 3671 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MRE11P49959 HNRNPH1-202ENST00000356731 3667 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
MRE11P49959 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MRE11P49959 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MRE11P49959 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MRE11P49959 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC16.79■□□□□ 0.28
MRE11P49959 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MRE11P49959 CYP2AB1P-202ENST00000454440 1456 ntBASIC16.79■□□□□ 0.28
MRE11P49959 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
MRE11P49959 MAP2K3-203ENST00000361818 2034 ntTSL 5 BASIC16.79■□□□□ 0.28
MRE11P49959 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
MRE11P49959 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MRE11P49959 HOXC4-202ENST00000430889 1666 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MRE11P49959 ASB3-204ENST00000406687 2205 ntTSL 2 BASIC16.78■□□□□ 0.28
MRE11P49959 ELOVL4-201ENST00000369816 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MRE11P49959 NTNG1-204ENST00000370067 4628 ntTSL 5 BASIC16.78■□□□□ 0.28
MRE11P49959 MYRIP-203ENST00000425621 2981 ntTSL 2 BASIC16.78■□□□□ 0.28
MRE11P49959 SEZ6L-201ENST00000248933 3248 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
MRE11P49959 SEZ6L-210ENST00000629590 3215 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
MRE11P49959 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
MRE11P49959 AC026271.4-201ENST00000578214 1833 ntBASIC16.78■□□□□ 0.28
MRE11P49959 LILRB3-201ENST00000245620 2066 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
MRE11P49959 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
MRE11P49959 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
MRE11P49959 MIR346-201ENST00000362234 95 ntBASIC16.78■□□□□ 0.28
MRE11P49959 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC16.78■□□□□ 0.28
MRE11P49959 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
MRE11P49959 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC16.78■□□□□ 0.28
MRE11P49959 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
MRE11P49959 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC16.78■□□□□ 0.28
MRE11P49959 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC16.78■□□□□ 0.28
MRE11P49959 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC16.78■□□□□ 0.28
MRE11P49959 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC16.78■□□□□ 0.28
MRE11P49959 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC16.78■□□□□ 0.28
MRE11P49959 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC16.78■□□□□ 0.28
MRE11P49959 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
MRE11P49959 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC16.78■□□□□ 0.28
MRE11P49959 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC16.78■□□□□ 0.28
MRE11P49959 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
MRE11P49959 CNKSR3-204ENST00000479339 2023 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
MRE11P49959 PPARGC1B-202ENST00000360453 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
MRE11P49959 DCAF8-201ENST00000326837 3972 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
MRE11P49959 SLC43A3-214ENST00000529554 2207 ntAPPRIS P3 TSL 2 BASIC16.78■□□□□ 0.28
MRE11P49959 NTN4-203ENST00000538383 1971 ntTSL 2 BASIC16.78■□□□□ 0.28
MRE11P49959 SIX1-203ENST00000554986 1959 ntTSL 3 BASIC16.78■□□□□ 0.28
MRE11P49959 CCDC142-202ENST00000393965 3406 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
MRE11P49959 LINC00567-201ENST00000569854 3409 ntBASIC16.78■□□□□ 0.28
MRE11P49959 SLC35A4-203ENST00000612662 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MRE11P49959 AC110048.1-201ENST00000604293 2157 ntBASIC16.78■□□□□ 0.28
MRE11P49959 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms