Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 MYO15B-237ENST00000642007 4893 ntBASIC14.41□□□□□ -0.1
DKK3Q9UBP4 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 KRT8P31-201ENST00000504812 1408 ntBASIC14.41□□□□□ -0.1
DKK3Q9UBP4 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 KRT18P9-201ENST00000604826 1300 ntBASIC14.41□□□□□ -0.1
DKK3Q9UBP4 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 AC007952.5-201ENST00000572818 1486 ntBASIC14.4□□□□□ -0.1
DKK3Q9UBP4 AC020910.6-201ENST00000623084 1459 ntBASIC14.4□□□□□ -0.1
DKK3Q9UBP4 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 HLA-DQB2-229ENST00000411527 1059 ntBASIC14.4□□□□□ -0.1
DKK3Q9UBP4 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 AC114947.1-202ENST00000514136 344 ntBASIC14.4□□□□□ -0.1
DKK3Q9UBP4 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 AL512310.5-201ENST00000551999 515 ntBASIC14.4□□□□□ -0.1
DKK3Q9UBP4 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 MIR3907-201ENST00000579424 151 ntBASIC14.4□□□□□ -0.1
DKK3Q9UBP4 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 CDK7-214ENST00000626796 358 ntTSL 5 BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 BX640514.1-201ENST00000583223 1918 ntBASIC14.4□□□□□ -0.1
DKK3Q9UBP4 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 AC097359.2-201ENST00000604992 2389 ntBASIC14.4□□□□□ -0.1
DKK3Q9UBP4 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 LINC01815-202ENST00000641468 1409 ntBASIC14.4□□□□□ -0.1
DKK3Q9UBP4 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
DKK3Q9UBP4 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.11
DKK3Q9UBP4 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms