Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CLRN1P58418 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC12.85□□□□□ -0.35
CLRN1P58418 ATP6V0CP2-201ENST00000469409 207 ntBASIC12.85□□□□□ -0.35
CLRN1P58418 AC119751.2-201ENST00000504529 210 ntBASIC12.85□□□□□ -0.35
CLRN1P58418 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC12.85□□□□□ -0.35
CLRN1P58418 MFF-223ENST00000524634 647 ntTSL 2 BASIC12.85□□□□□ -0.35
CLRN1P58418 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC12.85□□□□□ -0.35
CLRN1P58418 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC12.85□□□□□ -0.35
CLRN1P58418 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC12.85□□□□□ -0.35
CLRN1P58418 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
CLRN1P58418 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CLRN1P58418 AC124068.2-201ENST00000569473 1109 ntBASIC12.85□□□□□ -0.35
CLRN1P58418 RN7SL560P-201ENST00000577943 264 ntBASIC12.85□□□□□ -0.35
CLRN1P58418 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC12.85□□□□□ -0.35
CLRN1P58418 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC12.85□□□□□ -0.35
CLRN1P58418 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
CLRN1P58418 AC133540.1-201ENST00000620845 1019 ntBASIC12.85□□□□□ -0.35
CLRN1P58418 Z98259.2-201ENST00000641583 609 ntBASIC12.85□□□□□ -0.35
CLRN1P58418 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CLRN1P58418 LCOR-203ENST00000371097 4852 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
CLRN1P58418 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CLRN1P58418 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC12.85□□□□□ -0.35
CLRN1P58418 ARHGAP20-201ENST00000260283 6189 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
CLRN1P58418 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CLRN1P58418 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
CLRN1P58418 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
CLRN1P58418 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CLRN1P58418 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CLRN1P58418 GPR61-204ENST00000527748 4921 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
CLRN1P58418 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CLRN1P58418 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CLRN1P58418 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CLRN1P58418 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CLRN1P58418 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
CLRN1P58418 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CLRN1P58418 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC12.85□□□□□ -0.35
CLRN1P58418 CNTLN-201ENST00000380641 4871 ntAPPRIS ALT2 TSL 2 BASIC12.85□□□□□ -0.35
CLRN1P58418 PER3-208ENST00000613533 6318 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
CLRN1P58418 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CLRN1P58418 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
CLRN1P58418 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC12.85□□□□□ -0.35
CLRN1P58418 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC12.84□□□□□ -0.35
CLRN1P58418 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC12.84□□□□□ -0.35
CLRN1P58418 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
CLRN1P58418 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CLRN1P58418 LINC00865-202ENST00000448963 4272 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CLRN1P58418 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
CLRN1P58418 MYLK-202ENST00000354792 7531 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
CLRN1P58418 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC12.84□□□□□ -0.35
CLRN1P58418 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC12.84□□□□□ -0.35
CLRN1P58418 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
CLRN1P58418 PRDM15-207ENST00000447207 4928 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
CLRN1P58418 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CLRN1P58418 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CLRN1P58418 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
CLRN1P58418 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CLRN1P58418 BTBD6P1-201ENST00000412176 1267 ntBASIC12.84□□□□□ -0.35
CLRN1P58418 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC12.84□□□□□ -0.35
CLRN1P58418 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC12.84□□□□□ -0.35
CLRN1P58418 ST13P19-201ENST00000442505 1124 ntBASIC12.84□□□□□ -0.35
CLRN1P58418 TUBB8P8-201ENST00000458717 1058 ntBASIC12.84□□□□□ -0.35
CLRN1P58418 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
CLRN1P58418 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CLRN1P58418 RNA5SP412-201ENST00000516234 123 ntBASIC12.84□□□□□ -0.35
CLRN1P58418 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC12.84□□□□□ -0.35
CLRN1P58418 MIR4783-201ENST00000580343 82 ntBASIC12.84□□□□□ -0.35
CLRN1P58418 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC12.84□□□□□ -0.35
CLRN1P58418 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC12.84□□□□□ -0.35
CLRN1P58418 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC12.84□□□□□ -0.35
CLRN1P58418 AC239800.4-201ENST00000603712 296 ntBASIC12.84□□□□□ -0.35
CLRN1P58418 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CLRN1P58418 AL157996.1-201ENST00000624684 2299 ntBASIC12.84□□□□□ -0.35
CLRN1P58418 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
CLRN1P58418 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC12.84□□□□□ -0.35
CLRN1P58418 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC12.84□□□□□ -0.35
CLRN1P58418 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CLRN1P58418 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
CLRN1P58418 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CLRN1P58418 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC12.84□□□□□ -0.35
CLRN1P58418 SUGP2-203ENST00000452918 6176 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
CLRN1P58418 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC12.84□□□□□ -0.35
CLRN1P58418 PROM2-201ENST00000317620 4728 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CLRN1P58418 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC12.84□□□□□ -0.35
CLRN1P58418 OS9-207ENST00000439210 1946 ntTSL 2 BASIC12.84□□□□□ -0.35
CLRN1P58418 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC12.84□□□□□ -0.35
CLRN1P58418 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CLRN1P58418 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC12.84□□□□□ -0.35
CLRN1P58418 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
CLRN1P58418 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
CLRN1P58418 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.35
CLRN1P58418 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC12.83□□□□□ -0.35
CLRN1P58418 ADGRG6-202ENST00000296932 6849 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
CLRN1P58418 NAA15-201ENST00000296543 6222 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.35
CLRN1P58418 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC12.83□□□□□ -0.35
CLRN1P58418 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC12.83□□□□□ -0.35
CLRN1P58418 AC144522.1-201ENST00000625111 1658 ntBASIC12.83□□□□□ -0.35
CLRN1P58418 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC12.83□□□□□ -0.36
CLRN1P58418 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
CLRN1P58418 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC12.83□□□□□ -0.36
CLRN1P58418 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms