Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 KCNMA1-233ENST00000638351 3849 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
CXCL1P09341 RBL1-202ENST00000373664 5684 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CXCL1P09341 G2E3-202ENST00000438909 2334 ntTSL 2 BASIC11.13□□□□□ -0.63
CXCL1P09341 BRD1-201ENST00000216267 4614 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CXCL1P09341 FAM71E2-201ENST00000424985 3191 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
CXCL1P09341 DCAF5-209ENST00000557386 2883 ntAPPRIS ALT1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CXCL1P09341 FAM105A-201ENST00000274217 3597 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CXCL1P09341 NLRP2-214ENST00000543010 3576 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
CXCL1P09341 POLL-202ENST00000339310 2289 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
CXCL1P09341 RTN3-210ENST00000540798 3124 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
CXCL1P09341 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
CXCL1P09341 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CXCL1P09341 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
CXCL1P09341 SUN1-204ENST00000403868 978 ntTSL 2 BASIC11.13□□□□□ -0.63
CXCL1P09341 CTCFL-204ENST00000422869 2966 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
CXCL1P09341 AC004832.2-201ENST00000426397 482 ntBASIC11.13□□□□□ -0.63
CXCL1P09341 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC11.13□□□□□ -0.63
CXCL1P09341 TPM4P1-201ENST00000436100 807 ntBASIC11.13□□□□□ -0.63
CXCL1P09341 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CXCL1P09341 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC11.13□□□□□ -0.63
CXCL1P09341 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
CXCL1P09341 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC11.13□□□□□ -0.63
CXCL1P09341 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC11.13□□□□□ -0.63
CXCL1P09341 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC11.13□□□□□ -0.63
CXCL1P09341 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC11.13□□□□□ -0.63
CXCL1P09341 BX640515.1-201ENST00000617215 977 ntBASIC11.13□□□□□ -0.63
CXCL1P09341 AC105339.1-204ENST00000636249 355 ntBASIC11.13□□□□□ -0.63
CXCL1P09341 DDO-201ENST00000368923 1953 ntTSL 2 BASIC11.13□□□□□ -0.63
CXCL1P09341 ERN2-201ENST00000256797 3549 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
CXCL1P09341 WDR47-204ENST00000369965 4240 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
CXCL1P09341 SH3KBP1-202ENST00000379698 2678 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
CXCL1P09341 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC11.13□□□□□ -0.63
CXCL1P09341 CXCL5-201ENST00000296027 2538 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CXCL1P09341 ANP32E-210ENST00000629042 3054 ntTSL 5 BASIC11.13□□□□□ -0.63
CXCL1P09341 ABLIM2-206ENST00000447017 2902 ntAPPRIS P4 TSL 1 (best) BASIC11.13□□□□□ -0.63
CXCL1P09341 TMEM192-203ENST00000506087 2225 ntTSL 2 BASIC11.13□□□□□ -0.63
CXCL1P09341 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
CXCL1P09341 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
CXCL1P09341 SPOUT1-201ENST00000361256 4286 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CXCL1P09341 HK2-201ENST00000290573 5772 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CXCL1P09341 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CXCL1P09341 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
CXCL1P09341 CIITA-213ENST00000618327 4657 ntAPPRIS ALT2 TSL 2 BASIC11.13□□□□□ -0.63
CXCL1P09341 MED16-204ENST00000395808 3420 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
CXCL1P09341 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
CXCL1P09341 ADIRF-AS1-203ENST00000609111 3822 ntTSL 2 BASIC11.13□□□□□ -0.63
CXCL1P09341 STRCP1-201ENST00000509801 5328 ntBASIC11.13□□□□□ -0.63
CXCL1P09341 ALDH7A1-234ENST00000637782 1773 ntAPPRIS ALT1 TSL 5 BASIC11.13□□□□□ -0.63
CXCL1P09341 AL031432.4-201ENST00000641729 2190 ntBASIC11.13□□□□□ -0.63
CXCL1P09341 P3H2-201ENST00000319332 3509 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CXCL1P09341 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CXCL1P09341 SPAG8-202ENST00000396638 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
CXCL1P09341 SEC31A-202ENST00000311785 3909 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
CXCL1P09341 PPP1R12B-214ENST00000491336 2046 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
CXCL1P09341 ITGA5-201ENST00000293379 4444 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CXCL1P09341 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC11.12□□□□□ -0.63
CXCL1P09341 PIM1-201ENST00000373509 2650 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CXCL1P09341 DBIL5P-203ENST00000536214 2677 ntBASIC11.12□□□□□ -0.63
CXCL1P09341 TNKS-213ENST00000522110 2900 ntBASIC11.12□□□□□ -0.63
CXCL1P09341 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CXCL1P09341 GSE1-202ENST00000393243 7140 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
CXCL1P09341 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC11.12□□□□□ -0.63
CXCL1P09341 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
CXCL1P09341 ZCCHC12-201ENST00000310164 2231 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CXCL1P09341 WASHC1-201ENST00000442898 1827 ntAPPRIS P1 TSL 2 BASIC11.12□□□□□ -0.63
CXCL1P09341 OS9-203ENST00000389142 2457 ntTSL 5 BASIC11.12□□□□□ -0.63
CXCL1P09341 GDPD5-202ENST00000443276 3106 ntTSL 5 BASIC11.12□□□□□ -0.63
CXCL1P09341 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC11.12□□□□□ -0.63
CXCL1P09341 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC11.12□□□□□ -0.63
CXCL1P09341 CAMKK2-204ENST00000392473 2967 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
CXCL1P09341 ZNF148-205ENST00000484491 2952 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CXCL1P09341 ACO2-202ENST00000396512 2811 ntTSL 5 BASIC11.12□□□□□ -0.63
CXCL1P09341 RRBP1-201ENST00000246043 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
CXCL1P09341 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CXCL1P09341 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CXCL1P09341 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CXCL1P09341 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CXCL1P09341 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
CXCL1P09341 ATXN2L-203ENST00000340394 3807 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
CXCL1P09341 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC11.12□□□□□ -0.63
CXCL1P09341 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC11.12□□□□□ -0.63
CXCL1P09341 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CXCL1P09341 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CXCL1P09341 MPV17-208ENST00000405076 603 ntTSL 5 BASIC11.12□□□□□ -0.63
CXCL1P09341 AL627223.1-201ENST00000416693 442 ntBASIC11.12□□□□□ -0.63
CXCL1P09341 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC11.12□□□□□ -0.63
CXCL1P09341 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC11.12□□□□□ -0.63
CXCL1P09341 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
CXCL1P09341 HTR5BP-201ENST00000430851 1154 ntBASIC11.12□□□□□ -0.63
CXCL1P09341 SPDYE14P-201ENST00000442619 822 ntBASIC11.12□□□□□ -0.63
CXCL1P09341 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC11.12□□□□□ -0.63
CXCL1P09341 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC11.12□□□□□ -0.63
CXCL1P09341 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC11.12□□□□□ -0.63
CXCL1P09341 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
CXCL1P09341 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC11.12□□□□□ -0.63
CXCL1P09341 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CXCL1P09341 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC11.12□□□□□ -0.63
CXCL1P09341 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC11.12□□□□□ -0.63
CXCL1P09341 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC11.12□□□□□ -0.63
CXCL1P09341 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC11.12□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms