RNA–Protein interactions for RNA: ENST00000618327.4

CIITA-213, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CIITA, Length 4,657 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-213ENST00000618327 NISCHQ9Y2I1 1504 aa26.53■■□□□ 1.84
CIITA-213ENST00000618327 DCAF8L2P0C7V8 631 aa25.14■■□□□ 1.62
CIITA-213ENST00000618327 SHROOM4Q9ULL8 1493 aa23.92■■□□□ 1.42
CIITA-213ENST00000618327 SUPT5HO00267 1087 aaKnown RBP23.8■■□□□ 1.4
CIITA-213ENST00000618327 ABCC9O60706 1549 aa22.53■■□□□ 1.2
CIITA-213ENST00000618327 EHMT2Q96KQ7 1210 aa22.45■■□□□ 1.18
CIITA-213ENST00000618327 CCDC180Q9P1Z9 1646 aa22.25■■□□□ 1.15
CIITA-213ENST00000618327 FAM9AQ8IZU1 332 aaPredicted RBP22.25■■□□□ 1.15
CIITA-213ENST00000618327 TRIM41Q8WV44 630 aa22.18■■□□□ 1.14
CIITA-213ENST00000618327 ZCCHC6Q5VYS8 1495 aaKnown RBP22.07■■□□□ 1.12
CIITA-213ENST00000618327 PABPN1Q86U42 306 aaKnown RBP eCLIP21.95■■□□□ 1.1
CIITA-213ENST00000618327 APLP2Q06481 763 aa21.86■■□□□ 1.09
CIITA-213ENST00000618327 CHIC1Q5VXU3 224 aa21.74■■□□□ 1.07
CIITA-213ENST00000618327 RANGAP1P46060 587 aaPredicted RBP21.66■■□□□ 1.06
CIITA-213ENST00000618327 UBTFP17480 764 aaKnown RBP21.65■■□□□ 1.06
CIITA-213ENST00000618327 SCRIBQ14160 1630 aa21.65■■□□□ 1.06
CIITA-213ENST00000618327 TTBK1Q5TCY1 1321 aaPredicted RBP21.59■■□□□ 1.05
CIITA-213ENST00000618327 PCGF6Q9BYE7 350 aa21.56■■□□□ 1.04
CIITA-213ENST00000618327 RB1CC1Q8TDY2 1594 aa21.4■■□□□ 1.02
CIITA-213ENST00000618327 LOC105371045A0A1W2PR82 267 aa21.38■■□□□ 1.01
CIITA-213ENST00000618327 NACADO15069 1562 aa21.35■■□□□ 1.01
CIITA-213ENST00000618327 ATP1B4Q9UN42 357 aaPredicted RBP21.34■■□□□ 1.01
CIITA-213ENST00000618327 DCAF1Q9Y4B6 1507 aa21.29■■□□□ 1
CIITA-213ENST00000618327 PELP1Q8IZL8 1130 aaKnown RBP21.25■□□□□ 0.99
CIITA-213ENST00000618327 PPARGC1BQ86YN6 1023 aaKnown RBP21.15■□□□□ 0.98
CIITA-213ENST00000618327 CCER1Q8TC90 406 aaPredicted RBP21.04■□□□□ 0.96
CIITA-213ENST00000618327 TRIM26Q12899 539 aaPredicted RBP21.02■□□□□ 0.96
CIITA-213ENST00000618327 RSF1Q96T23 1441 aaPredicted RBP20.99■□□□□ 0.95
CIITA-213ENST00000618327 ZEB1P37275 1124 aaPredicted RBP20.98■□□□□ 0.95
CIITA-213ENST00000618327 MYO15BQ96JP2 1530 aa20.82■□□□□ 0.92
CIITA-213ENST00000618327 CSRNP3Q8WYN3 585 aa20.79■□□□□ 0.92
CIITA-213ENST00000618327 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.77■□□□□ 0.92
CIITA-213ENST00000618327 HNRNPUL2Q1KMD3 747 aaKnown RBP20.77■□□□□ 0.92
CIITA-213ENST00000618327 CECR2Q9BXF3 1484 aa20.77■□□□□ 0.92
CIITA-213ENST00000618327 BAZ1AQ9NRL2 1556 aaPredicted RBP20.73■□□□□ 0.91
CIITA-213ENST00000618327 ITGAEP38570 1179 aa20.69■□□□□ 0.9
CIITA-213ENST00000618327 BAZ1BQ9UIG0 1483 aaKnown RBP20.64■□□□□ 0.89
CIITA-213ENST00000618327 HRCP23327 699 aa20.54■□□□□ 0.88
CIITA-213ENST00000618327 FBLN2P98095 1184 aa20.53■□□□□ 0.88
CIITA-213ENST00000618327 MROH2BQ7Z745 1585 aa20.53■□□□□ 0.88
CIITA-213ENST00000618327 CENPBP07199 599 aaPredicted RBP20.49■□□□□ 0.87
CIITA-213ENST00000618327 P3H3Q8IVL6 736 aa20.41■□□□□ 0.86
CIITA-213ENST00000618327 FAM50AQ14320 339 aaKnown RBP20.39■□□□□ 0.85
CIITA-213ENST00000618327 WRNQ14191 1432 aaPredicted RBP eCLIP20.39■□□□□ 0.85
CIITA-213ENST00000618327 MYT1Q01538 1121 aa20.36■□□□□ 0.85
CIITA-213ENST00000618327 ERICH6Q7L0X2 663 aa20.36■□□□□ 0.85
CIITA-213ENST00000618327 MYT1LQ9UL68 1186 aa20.36■□□□□ 0.85
CIITA-213ENST00000618327 SMARCA2P51531 1590 aa20.29■□□□□ 0.84
CIITA-213ENST00000618327 EEA1Q15075 1411 aa20.28■□□□□ 0.84
CIITA-213ENST00000618327 CCDC88BA6NC98 1476 aa20.27■□□□□ 0.84
CIITA-213ENST00000618327 WIZO95785 1651 aa20.25■□□□□ 0.83
CIITA-213ENST00000618327 TOP2AP11388 1531 aaKnown RBP20.18■□□□□ 0.82
CIITA-213ENST00000618327 ARID3CA6NKF2 412 aa20.18■□□□□ 0.82
CIITA-213ENST00000618327 SMARCA4P51532 1647 aa20.15■□□□□ 0.82
CIITA-213ENST00000618327 GOLGA3Q08378 1498 aa20.12■□□□□ 0.81
CIITA-213ENST00000618327 KIF27Q86VH2 1401 aa20.12■□□□□ 0.81
CIITA-213ENST00000618327 ATAD2BQ9ULI0 1458 aa20.11■□□□□ 0.81
CIITA-213ENST00000618327 CLIP1P30622 1438 aa20.1■□□□□ 0.81
CIITA-213ENST00000618327 TRIM52Q96A61 297 aa20.09■□□□□ 0.81
CIITA-213ENST00000618327 CDK11AQ9UQ88 783 aaPredicted RBP20.06■□□□□ 0.8
CIITA-213ENST00000618327 CHMP7Q8WUX9 453 aaPredicted RBP20.04■□□□□ 0.8
CIITA-213ENST00000618327 CEP162Q5TB80 1403 aa20.03■□□□□ 0.8
CIITA-213ENST00000618327 CEP164Q9UPV0 1460 aa20.02■□□□□ 0.8
CIITA-213ENST00000618327 ABCC8Q09428 1581 aa20.02■□□□□ 0.8
CIITA-213ENST00000618327 YTHDC1Q96MU7 727 aaKnown RBP20.01■□□□□ 0.79
CIITA-213ENST00000618327 TNIKQ9UKE5 1360 aa20■□□□□ 0.79
CIITA-213ENST00000618327 SOGA1O94964 1423 aa19.99■□□□□ 0.79
CIITA-213ENST00000618327 ERCC6Q03468 1493 aa19.97■□□□□ 0.79
CIITA-213ENST00000618327 NEUROD1Q13562 356 aa19.96■□□□□ 0.79
CIITA-213ENST00000618327 POLR3GLQ9BT43 218 aa19.92■□□□□ 0.78
CIITA-213ENST00000618327 NEFLP07196 543 aa19.92■□□□□ 0.78
CIITA-213ENST00000618327 ZNF777Q9ULD5 760 aaPredicted RBP19.92■□□□□ 0.78
CIITA-213ENST00000618327 CADPSQ9ULU8 1353 aa19.91■□□□□ 0.78
CIITA-213ENST00000618327 CUX2O14529 1486 aa19.9■□□□□ 0.78
CIITA-213ENST00000618327 PDS5BQ9NTI5 1447 aa19.88■□□□□ 0.77
CIITA-213ENST00000618327 MTUS2Q5JR59 1369 aa19.83■□□□□ 0.77
CIITA-213ENST00000618327 CARMIL1Q5VZK9 1371 aa19.83■□□□□ 0.76
CIITA-213ENST00000618327 DIEXFQ68CQ4 756 aaKnown RBP19.82■□□□□ 0.76
CIITA-213ENST00000618327 EIF4G1Q04637 1599 aaKnown RBP19.76■□□□□ 0.75
CIITA-213ENST00000618327 NCAPD3P42695 1498 aa19.75■□□□□ 0.75
CIITA-213ENST00000618327 NPM1P06748 294 aaKnown RBP eCLIP19.73■□□□□ 0.75
CIITA-213ENST00000618327 CNGB1Q14028 1251 aaPredicted RBP19.69■□□□□ 0.74
CIITA-213ENST00000618327 ZNF326Q5BKZ1 582 aaKnown RBP19.69■□□□□ 0.74
CIITA-213ENST00000618327 TDRD9Q8NDG6 1382 aaKnown RBP19.68■□□□□ 0.74
CIITA-213ENST00000618327 CHIC2Q9UKJ5 165 aa19.67■□□□□ 0.74
CIITA-213ENST00000618327 ZNF316A6NFI3 1004 aaPredicted RBP19.65■□□□□ 0.74
CIITA-213ENST00000618327 FANCD2Q9BXW9 1451 aa19.63■□□□□ 0.73
CIITA-213ENST00000618327 PLEKHD1A6NEE1 506 aa19.6■□□□□ 0.73
CIITA-213ENST00000618327 FHAD1B1AJZ9 1412 aa19.59■□□□□ 0.73
CIITA-213ENST00000618327 BICRAQ9NZM4 1560 aa19.58■□□□□ 0.73
CIITA-213ENST00000618327 TSPY4P0CV99 314 aa19.57■□□□□ 0.72
CIITA-213ENST00000618327 TSPY10P0CW01 314 aa19.57■□□□□ 0.72
CIITA-213ENST00000618327 VPS8Q8N3P4 1428 aa19.54■□□□□ 0.72
CIITA-213ENST00000618327 RUSC2Q8N2Y8 1516 aa19.54■□□□□ 0.72
CIITA-213ENST00000618327 TONSLQ96HA7 1378 aa19.52■□□□□ 0.72
CIITA-213ENST00000618327 SLC4A1APQ9BWU0 796 aaKnown RBP19.52■□□□□ 0.71
CIITA-213ENST00000618327 KCNH8Q96L42 1107 aa19.5■□□□□ 0.71
CIITA-213ENST00000618327 RAPGEF2Q9Y4G8 1499 aa19.49■□□□□ 0.71
CIITA-213ENST00000618327 RRP7BPQ9NSQ0 103 aa19.47■□□□□ 0.71
CIITA-213ENST00000618327 CFDP1Q9UEE9 299 aaPredicted RBP19.45■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms