Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
USP47Q96K76 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC31.83■■■□□ 2.69
USP47Q96K76 AC008406.3-201ENST00000620001 1374 ntBASIC31.83■■■□□ 2.69
USP47Q96K76 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC31.83■■■□□ 2.69
USP47Q96K76 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
USP47Q96K76 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
USP47Q96K76 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
USP47Q96K76 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC31.82■■■□□ 2.68
USP47Q96K76 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
USP47Q96K76 AL136116.3-201ENST00000402907 1138 ntBASIC31.81■■■□□ 2.68
USP47Q96K76 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC31.81■■■□□ 2.68
USP47Q96K76 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC31.81■■■□□ 2.68
USP47Q96K76 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
USP47Q96K76 H19-210ENST00000439725 1929 ntTSL 2 BASIC31.81■■■□□ 2.68
USP47Q96K76 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC31.81■■■□□ 2.68
USP47Q96K76 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
USP47Q96K76 MIR935-201ENST00000401179 91 ntBASIC31.81■■■□□ 2.68
USP47Q96K76 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC31.81■■■□□ 2.68
USP47Q96K76 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
USP47Q96K76 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
USP47Q96K76 NKILA-201ENST00000613231 537 ntTSL 4 BASIC31.8■■■□□ 2.68
USP47Q96K76 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC31.8■■■□□ 2.68
USP47Q96K76 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
USP47Q96K76 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC31.79■■■□□ 2.68
USP47Q96K76 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC31.79■■■□□ 2.68
USP47Q96K76 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
USP47Q96K76 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC31.79■■■□□ 2.68
USP47Q96K76 GATM-206ENST00000558336 1522 ntTSL 2 BASIC31.79■■■□□ 2.68
USP47Q96K76 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
USP47Q96K76 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
USP47Q96K76 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC31.78■■■□□ 2.68
USP47Q96K76 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC31.78■■■□□ 2.68
USP47Q96K76 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
USP47Q96K76 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC31.77■■■□□ 2.68
USP47Q96K76 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC31.77■■■□□ 2.68
USP47Q96K76 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
USP47Q96K76 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
USP47Q96K76 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
USP47Q96K76 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC31.77■■■□□ 2.68
USP47Q96K76 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.68
USP47Q96K76 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.68
USP47Q96K76 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.68
USP47Q96K76 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC31.76■■■□□ 2.68
USP47Q96K76 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC31.76■■■□□ 2.68
USP47Q96K76 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
USP47Q96K76 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC31.75■■■□□ 2.67
USP47Q96K76 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC31.75■■■□□ 2.67
USP47Q96K76 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
USP47Q96K76 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
USP47Q96K76 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
USP47Q96K76 THRA-202ENST00000394121 2260 ntTSL 2 BASIC31.75■■■□□ 2.67
USP47Q96K76 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
USP47Q96K76 PKM-204ENST00000449901 2526 ntTSL 2 BASIC31.75■■■□□ 2.67
USP47Q96K76 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
USP47Q96K76 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC31.74■■■□□ 2.67
USP47Q96K76 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC31.74■■■□□ 2.67
USP47Q96K76 PEMT-206ENST00000435340 960 ntTSL 5 BASIC31.74■■■□□ 2.67
USP47Q96K76 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC31.74■■■□□ 2.67
USP47Q96K76 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC31.73■■■□□ 2.67
USP47Q96K76 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
USP47Q96K76 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC31.73■■■□□ 2.67
USP47Q96K76 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
USP47Q96K76 ASB1-202ENST00000409297 878 ntTSL 5 BASIC31.73■■■□□ 2.67
USP47Q96K76 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
USP47Q96K76 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
USP47Q96K76 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
USP47Q96K76 SRD5A1P1-201ENST00000442297 786 ntBASIC31.72■■■□□ 2.67
USP47Q96K76 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC31.72■■■□□ 2.67
USP47Q96K76 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC31.72■■■□□ 2.67
USP47Q96K76 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
USP47Q96K76 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC31.72■■■□□ 2.67
USP47Q96K76 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC31.72■■■□□ 2.67
USP47Q96K76 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC31.72■■■□□ 2.67
USP47Q96K76 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC31.72■■■□□ 2.67
USP47Q96K76 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
USP47Q96K76 AC079630.1-202ENST00000618127 1840 ntBASIC31.72■■■□□ 2.67
USP47Q96K76 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
USP47Q96K76 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC31.71■■■□□ 2.67
USP47Q96K76 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC31.71■■■□□ 2.67
USP47Q96K76 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC31.71■■■□□ 2.67
USP47Q96K76 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC31.71■■■□□ 2.67
USP47Q96K76 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
USP47Q96K76 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC31.7■■■□□ 2.67
USP47Q96K76 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC31.7■■■□□ 2.67
USP47Q96K76 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC31.7■■■□□ 2.67
USP47Q96K76 VGF-203ENST00000611537 1622 ntTSL 5 BASIC31.7■■■□□ 2.67
USP47Q96K76 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC31.7■■■□□ 2.66
USP47Q96K76 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
USP47Q96K76 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
USP47Q96K76 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC31.69■■■□□ 2.66
USP47Q96K76 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC31.69■■■□□ 2.66
USP47Q96K76 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC31.68■■■□□ 2.66
USP47Q96K76 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC31.68■■■□□ 2.66
USP47Q96K76 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC31.68■■■□□ 2.66
USP47Q96K76 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC31.68■■■□□ 2.66
USP47Q96K76 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
USP47Q96K76 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC31.68■■■□□ 2.66
USP47Q96K76 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC31.68■■■□□ 2.66
USP47Q96K76 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC31.67■■■□□ 2.66
USP47Q96K76 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms