Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
FREM3P0C091 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
FREM3P0C091 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
FREM3P0C091 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
FREM3P0C091 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.57■□□□□ 0.88
FREM3P0C091 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
FREM3P0C091 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
FREM3P0C091 SHD-204ENST00000599689 1729 ntTSL 5 BASIC20.57■□□□□ 0.88
FREM3P0C091 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
FREM3P0C091 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
FREM3P0C091 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC20.57■□□□□ 0.88
FREM3P0C091 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
FREM3P0C091 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
FREM3P0C091 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
FREM3P0C091 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
FREM3P0C091 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
FREM3P0C091 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
FREM3P0C091 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
FREM3P0C091 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
FREM3P0C091 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
FREM3P0C091 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.56■□□□□ 0.88
FREM3P0C091 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.56■□□□□ 0.88
FREM3P0C091 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.56■□□□□ 0.88
FREM3P0C091 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC20.56■□□□□ 0.88
FREM3P0C091 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC20.56■□□□□ 0.88
FREM3P0C091 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC20.56■□□□□ 0.88
FREM3P0C091 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
FREM3P0C091 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.56■□□□□ 0.88
FREM3P0C091 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.56■□□□□ 0.88
FREM3P0C091 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.56■□□□□ 0.88
FREM3P0C091 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
FREM3P0C091 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
FREM3P0C091 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC20.55■□□□□ 0.88
FREM3P0C091 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
FREM3P0C091 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
FREM3P0C091 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
FREM3P0C091 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
FREM3P0C091 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
FREM3P0C091 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.54■□□□□ 0.88
FREM3P0C091 AC009102.2-201ENST00000606772 1639 ntBASIC20.54■□□□□ 0.88
FREM3P0C091 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
FREM3P0C091 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
FREM3P0C091 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
FREM3P0C091 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.54■□□□□ 0.88
FREM3P0C091 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.53■□□□□ 0.88
FREM3P0C091 AC106739.1-201ENST00000617035 715 ntBASIC20.53■□□□□ 0.88
FREM3P0C091 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
FREM3P0C091 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC20.53■□□□□ 0.88
FREM3P0C091 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
FREM3P0C091 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
FREM3P0C091 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
FREM3P0C091 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.53■□□□□ 0.88
FREM3P0C091 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
FREM3P0C091 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.53■□□□□ 0.88
FREM3P0C091 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
FREM3P0C091 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
FREM3P0C091 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
FREM3P0C091 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
FREM3P0C091 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
FREM3P0C091 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
FREM3P0C091 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
FREM3P0C091 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
FREM3P0C091 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
FREM3P0C091 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.52■□□□□ 0.87
FREM3P0C091 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
FREM3P0C091 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
FREM3P0C091 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.51■□□□□ 0.87
FREM3P0C091 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
FREM3P0C091 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.51■□□□□ 0.87
FREM3P0C091 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
FREM3P0C091 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
FREM3P0C091 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
FREM3P0C091 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.51■□□□□ 0.87
FREM3P0C091 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
FREM3P0C091 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
FREM3P0C091 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
FREM3P0C091 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
FREM3P0C091 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
FREM3P0C091 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
FREM3P0C091 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC20.5■□□□□ 0.87
FREM3P0C091 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
FREM3P0C091 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC20.5■□□□□ 0.87
FREM3P0C091 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
FREM3P0C091 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.5■□□□□ 0.87
FREM3P0C091 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
FREM3P0C091 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.5■□□□□ 0.87
FREM3P0C091 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.5■□□□□ 0.87
FREM3P0C091 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
FREM3P0C091 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
FREM3P0C091 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
FREM3P0C091 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
FREM3P0C091 ALDH1A3-203ENST00000557963 1670 ntBASIC20.49■□□□□ 0.87
FREM3P0C091 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC20.49■□□□□ 0.87
FREM3P0C091 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.49■□□□□ 0.87
FREM3P0C091 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
FREM3P0C091 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
FREM3P0C091 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
FREM3P0C091 AC024257.2-201ENST00000549699 147 ntBASIC20.49■□□□□ 0.87
FREM3P0C091 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
FREM3P0C091 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 12.9 ms