Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 H19-210ENST00000439725 1929 ntTSL 2 BASIC30.34■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC30.33■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC30.33■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC30.33■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 AC096631.2-201ENST00000436136 790 ntBASIC30.33■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC30.33■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC30.33■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC30.33■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 LTK-203ENST00000453182 2412 ntTSL 2 BASIC30.33■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC30.33■■■□□ 2.45
SENP3-EIF4A1A0A087X0R7 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC30.32■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 UNC93B8-201ENST00000511903 705 ntBASIC30.32■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC30.32■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 AL022069.1-201ENST00000568025 1636 ntBASIC30.32■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC30.32■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 CD37-213ENST00000598095 1598 ntTSL 2 BASIC30.32■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC30.32■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC30.31■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 LGR4-203ENST00000480977 492 ntTSL 2 BASIC30.31■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC30.31■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC30.31■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 EI24-204ENST00000527235 1625 ntTSL 5 BASIC30.31■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC30.31■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC30.31■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC30.31■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC30.3■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC30.3■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC30.29■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC30.29■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 GLI3-203ENST00000437480 451 ntTSL 2 BASIC30.29■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC30.29■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 KRT125P-201ENST00000546827 989 ntBASIC30.29■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC30.29■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 ANKRD20A6P-201ENST00000618763 204 ntBASIC30.29■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC30.29■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC30.29■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC30.29■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC30.29■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC30.29■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC30.29■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC30.29■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC30.28■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC30.28■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC30.28■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC30.27■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC30.27■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC30.27■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC30.27■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC30.27■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC30.27■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC30.26■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
SENP3-EIF4A1A0A087X0R7 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC30.26■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC30.26■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC30.26■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 AC133561.4-201ENST00000566112 224 ntBASIC30.26■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC30.26■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 MIR4787-201ENST00000607364 84 ntBASIC30.26■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC30.26■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC30.25■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC30.25■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC30.24■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC30.24■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC30.24■■■□□ 2.43
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms