Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
COL20A1Q9P218 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL20A1Q9P218 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC16.04■□□□□ 0.16
COL20A1Q9P218 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL20A1Q9P218 AC007191.1-201ENST00000623179 2995 ntBASIC16.04■□□□□ 0.16
COL20A1Q9P218 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL20A1Q9P218 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
COL20A1Q9P218 FER1L4-210ENST00000615531 5998 ntBASIC16.04■□□□□ 0.16
COL20A1Q9P218 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
COL20A1Q9P218 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
COL20A1Q9P218 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL20A1Q9P218 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC16.03■□□□□ 0.16
COL20A1Q9P218 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL20A1Q9P218 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC16.03■□□□□ 0.16
COL20A1Q9P218 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL20A1Q9P218 AC138761.6-201ENST00000583997 1423 ntBASIC16.03■□□□□ 0.16
COL20A1Q9P218 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL20A1Q9P218 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC16.03■□□□□ 0.16
COL20A1Q9P218 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC16.03■□□□□ 0.16
COL20A1Q9P218 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
COL20A1Q9P218 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL20A1Q9P218 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
COL20A1Q9P218 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL20A1Q9P218 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC16.03■□□□□ 0.16
COL20A1Q9P218 AC152010.1-201ENST00000415779 2006 ntBASIC16.03■□□□□ 0.16
COL20A1Q9P218 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL20A1Q9P218 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL20A1Q9P218 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL20A1Q9P218 RPL3P2-204ENST00000413027 1203 ntBASIC16.03■□□□□ 0.16
COL20A1Q9P218 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC16.03■□□□□ 0.16
COL20A1Q9P218 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC16.03■□□□□ 0.16
COL20A1Q9P218 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC16.03■□□□□ 0.16
COL20A1Q9P218 IGHV1-12-201ENST00000518307 205 ntBASIC16.03■□□□□ 0.16
COL20A1Q9P218 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC16.03■□□□□ 0.16
COL20A1Q9P218 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC16.03■□□□□ 0.16
COL20A1Q9P218 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC16.03■□□□□ 0.16
COL20A1Q9P218 DBP-202ENST00000593500 712 ntTSL 2 BASIC16.03■□□□□ 0.16
COL20A1Q9P218 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL20A1Q9P218 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL20A1Q9P218 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC16.03■□□□□ 0.16
COL20A1Q9P218 HELLS-212ENST00000630929 400 ntTSL 5 BASIC16.03■□□□□ 0.16
COL20A1Q9P218 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
COL20A1Q9P218 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL20A1Q9P218 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC16.03■□□□□ 0.16
COL20A1Q9P218 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL20A1Q9P218 TBC1D27-202ENST00000424239 1573 ntBASIC16.03■□□□□ 0.16
COL20A1Q9P218 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC16.03■□□□□ 0.16
COL20A1Q9P218 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC16.03■□□□□ 0.16
COL20A1Q9P218 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL20A1Q9P218 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC16.03■□□□□ 0.16
COL20A1Q9P218 HPSE2-206ENST00000628193 1760 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL20A1Q9P218 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL20A1Q9P218 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL20A1Q9P218 USP39-207ENST00000450066 2086 ntTSL 2 BASIC16.03■□□□□ 0.16
COL20A1Q9P218 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL20A1Q9P218 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
COL20A1Q9P218 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL20A1Q9P218 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL20A1Q9P218 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC16.02■□□□□ 0.16
COL20A1Q9P218 AC015909.5-201ENST00000624336 2266 ntBASIC16.02■□□□□ 0.16
COL20A1Q9P218 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
COL20A1Q9P218 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.02■□□□□ 0.16
COL20A1Q9P218 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL20A1Q9P218 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL20A1Q9P218 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
COL20A1Q9P218 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC16.02■□□□□ 0.16
COL20A1Q9P218 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC16.02■□□□□ 0.16
COL20A1Q9P218 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
COL20A1Q9P218 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC16.02■□□□□ 0.16
COL20A1Q9P218 AC092573.1-201ENST00000433054 884 ntBASIC16.02■□□□□ 0.16
COL20A1Q9P218 AC092638.2-201ENST00000441105 947 ntBASIC16.02■□□□□ 0.16
COL20A1Q9P218 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC16.02■□□□□ 0.16
COL20A1Q9P218 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
COL20A1Q9P218 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC16.02■□□□□ 0.16
COL20A1Q9P218 RNA5SP406-201ENST00000516106 112 ntBASIC16.02■□□□□ 0.16
COL20A1Q9P218 AP003398.1-201ENST00000531124 318 ntBASIC16.02■□□□□ 0.16
COL20A1Q9P218 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC16.02■□□□□ 0.16
COL20A1Q9P218 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC16.02■□□□□ 0.16
COL20A1Q9P218 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC16.02■□□□□ 0.16
COL20A1Q9P218 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC16.02■□□□□ 0.16
COL20A1Q9P218 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC16.02■□□□□ 0.16
COL20A1Q9P218 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC16.02■□□□□ 0.16
COL20A1Q9P218 LINC00244-201ENST00000625073 613 ntBASIC16.02■□□□□ 0.16
COL20A1Q9P218 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC16.02■□□□□ 0.15
COL20A1Q9P218 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL20A1Q9P218 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL20A1Q9P218 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC16.02■□□□□ 0.15
COL20A1Q9P218 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
COL20A1Q9P218 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL20A1Q9P218 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL20A1Q9P218 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL20A1Q9P218 AC023908.3-201ENST00000564211 3047 ntBASIC16.02■□□□□ 0.15
COL20A1Q9P218 CYP51A1P3-201ENST00000400072 1428 ntBASIC16.02■□□□□ 0.15
COL20A1Q9P218 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
COL20A1Q9P218 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL20A1Q9P218 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
COL20A1Q9P218 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL20A1Q9P218 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
COL20A1Q9P218 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL20A1Q9P218 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 65.5 ms