Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
PCDH1Q08174 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PCDH1Q08174 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC13.88□□□□□ -0.19
PCDH1Q08174 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC13.88□□□□□ -0.19
PCDH1Q08174 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
PCDH1Q08174 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PCDH1Q08174 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC13.88□□□□□ -0.19
PCDH1Q08174 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PCDH1Q08174 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
PCDH1Q08174 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC13.87□□□□□ -0.19
PCDH1Q08174 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
PCDH1Q08174 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
PCDH1Q08174 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
PCDH1Q08174 CETP-203ENST00000566128 1733 ntTSL 5 BASIC13.87□□□□□ -0.19
PCDH1Q08174 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
PCDH1Q08174 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC13.87□□□□□ -0.19
PCDH1Q08174 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC13.87□□□□□ -0.19
PCDH1Q08174 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
PCDH1Q08174 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
PCDH1Q08174 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
PCDH1Q08174 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
PCDH1Q08174 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
PCDH1Q08174 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC13.87□□□□□ -0.19
PCDH1Q08174 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
PCDH1Q08174 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
PCDH1Q08174 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
PCDH1Q08174 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
PCDH1Q08174 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
PCDH1Q08174 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC13.87□□□□□ -0.19
PCDH1Q08174 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
PCDH1Q08174 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC13.87□□□□□ -0.19
PCDH1Q08174 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC13.87□□□□□ -0.19
PCDH1Q08174 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
PCDH1Q08174 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
PCDH1Q08174 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
PCDH1Q08174 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
PCDH1Q08174 JTB-202ENST00000356648 1040 ntTSL 2 BASIC13.87□□□□□ -0.19
PCDH1Q08174 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
PCDH1Q08174 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
PCDH1Q08174 MTX1P1-201ENST00000440904 838 ntBASIC13.87□□□□□ -0.19
PCDH1Q08174 OR2R1P-201ENST00000441404 914 ntBASIC13.87□□□□□ -0.19
PCDH1Q08174 GOLGA2P4-201ENST00000441462 777 ntBASIC13.87□□□□□ -0.19
PCDH1Q08174 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC13.87□□□□□ -0.19
PCDH1Q08174 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC13.87□□□□□ -0.19
PCDH1Q08174 MFF-223ENST00000524634 647 ntTSL 2 BASIC13.87□□□□□ -0.19
PCDH1Q08174 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
PCDH1Q08174 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC13.87□□□□□ -0.19
PCDH1Q08174 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC13.87□□□□□ -0.19
PCDH1Q08174 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
PCDH1Q08174 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC13.87□□□□□ -0.19
PCDH1Q08174 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC13.87□□□□□ -0.19
PCDH1Q08174 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
PCDH1Q08174 KLK3-211ENST00000597483 810 ntTSL 2 BASIC13.87□□□□□ -0.19
PCDH1Q08174 AC010328.2-201ENST00000597698 1111 ntBASIC13.87□□□□□ -0.19
PCDH1Q08174 TECR-220ENST00000600083 1204 ntTSL 2 BASIC13.87□□□□□ -0.19
PCDH1Q08174 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
PCDH1Q08174 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
PCDH1Q08174 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC13.87□□□□□ -0.19
PCDH1Q08174 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
PCDH1Q08174 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
PCDH1Q08174 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC13.87□□□□□ -0.19
PCDH1Q08174 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC13.87□□□□□ -0.19
PCDH1Q08174 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
PCDH1Q08174 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
PCDH1Q08174 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
PCDH1Q08174 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
PCDH1Q08174 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
PCDH1Q08174 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
PCDH1Q08174 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
PCDH1Q08174 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
PCDH1Q08174 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
PCDH1Q08174 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
PCDH1Q08174 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC13.87□□□□□ -0.19
PCDH1Q08174 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
PCDH1Q08174 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
PCDH1Q08174 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
PCDH1Q08174 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
PCDH1Q08174 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
PCDH1Q08174 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC13.86□□□□□ -0.19
PCDH1Q08174 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC13.86□□□□□ -0.19
PCDH1Q08174 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
PCDH1Q08174 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
PCDH1Q08174 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC13.86□□□□□ -0.19
PCDH1Q08174 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
PCDH1Q08174 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC13.86□□□□□ -0.19
PCDH1Q08174 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
PCDH1Q08174 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
PCDH1Q08174 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
PCDH1Q08174 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
PCDH1Q08174 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
PCDH1Q08174 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
PCDH1Q08174 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
PCDH1Q08174 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC13.86□□□□□ -0.19
PCDH1Q08174 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
PCDH1Q08174 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
PCDH1Q08174 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC13.86□□□□□ -0.19
PCDH1Q08174 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
PCDH1Q08174 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC13.86□□□□□ -0.19
PCDH1Q08174 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
PCDH1Q08174 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms