Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 RN7SL713P-201ENST00000582127 302 ntBASIC12.84□□□□□ -0.35
VRK1Q99986 AC103810.3-201ENST00000583567 96 ntBASIC12.84□□□□□ -0.35
VRK1Q99986 CYGB-203ENST00000589145 788 ntTSL 3 BASIC12.84□□□□□ -0.35
VRK1Q99986 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC12.84□□□□□ -0.35
VRK1Q99986 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC12.84□□□□□ -0.35
VRK1Q99986 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC12.84□□□□□ -0.35
VRK1Q99986 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
VRK1Q99986 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
VRK1Q99986 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
VRK1Q99986 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC12.84□□□□□ -0.35
VRK1Q99986 AC015802.1-201ENST00000588104 1449 ntBASIC12.84□□□□□ -0.35
VRK1Q99986 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
VRK1Q99986 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC12.84□□□□□ -0.35
VRK1Q99986 GABPB1-201ENST00000220429 2726 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
VRK1Q99986 AL137783.1-201ENST00000623494 1896 ntBASIC12.84□□□□□ -0.35
VRK1Q99986 PRDM15-207ENST00000447207 4928 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
VRK1Q99986 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC12.84□□□□□ -0.35
VRK1Q99986 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
VRK1Q99986 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
VRK1Q99986 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
VRK1Q99986 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC12.84□□□□□ -0.35
VRK1Q99986 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
VRK1Q99986 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
VRK1Q99986 USP40-208ENST00000450966 5616 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
VRK1Q99986 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
VRK1Q99986 REXO1L4P-201ENST00000605109 1937 ntBASIC12.84□□□□□ -0.35
VRK1Q99986 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC12.84□□□□□ -0.35
VRK1Q99986 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
VRK1Q99986 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
VRK1Q99986 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC12.84□□□□□ -0.35
VRK1Q99986 HNF1A-201ENST00000257555 3442 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
VRK1Q99986 STX16-NPEPL1-202ENST00000530122 3433 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
VRK1Q99986 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
VRK1Q99986 WDR66-201ENST00000288912 4467 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
VRK1Q99986 OR2C3-204ENST00000641802 8509 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
VRK1Q99986 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.35
VRK1Q99986 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC12.83□□□□□ -0.35
VRK1Q99986 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
VRK1Q99986 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
VRK1Q99986 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC12.83□□□□□ -0.35
VRK1Q99986 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
VRK1Q99986 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.35
VRK1Q99986 DNM3-202ENST00000367731 7613 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.35
VRK1Q99986 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
VRK1Q99986 AL133338.1-201ENST00000565695 1517 ntBASIC12.83□□□□□ -0.35
VRK1Q99986 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
VRK1Q99986 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
VRK1Q99986 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC12.83□□□□□ -0.36
VRK1Q99986 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC12.83□□□□□ -0.36
VRK1Q99986 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
VRK1Q99986 ERVK13-1-207ENST00000569465 3321 ntTSL 2 BASIC12.83□□□□□ -0.36
VRK1Q99986 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
VRK1Q99986 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
VRK1Q99986 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC12.83□□□□□ -0.36
VRK1Q99986 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
VRK1Q99986 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
VRK1Q99986 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
VRK1Q99986 AC104457.1-201ENST00000401024 814 ntBASIC12.83□□□□□ -0.36
VRK1Q99986 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
VRK1Q99986 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC12.83□□□□□ -0.36
VRK1Q99986 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC12.83□□□□□ -0.36
VRK1Q99986 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC12.83□□□□□ -0.36
VRK1Q99986 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC12.83□□□□□ -0.36
VRK1Q99986 RPSAP36-202ENST00000494591 1261 ntBASIC12.83□□□□□ -0.36
VRK1Q99986 AL391280.1-201ENST00000506969 1062 ntBASIC12.83□□□□□ -0.36
VRK1Q99986 CD74-212ENST00000524315 584 ntTSL 5 BASIC12.83□□□□□ -0.36
VRK1Q99986 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC12.83□□□□□ -0.36
VRK1Q99986 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC12.83□□□□□ -0.36
VRK1Q99986 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
VRK1Q99986 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
VRK1Q99986 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
VRK1Q99986 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
VRK1Q99986 IKZF1-202ENST00000343574 5925 ntTSL 5 BASIC12.83□□□□□ -0.36
VRK1Q99986 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
VRK1Q99986 ZDHHC15-201ENST00000373367 5796 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
VRK1Q99986 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
VRK1Q99986 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
VRK1Q99986 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC12.83□□□□□ -0.36
VRK1Q99986 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
VRK1Q99986 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
VRK1Q99986 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
VRK1Q99986 ZNF772-204ENST00000427512 5130 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
VRK1Q99986 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
VRK1Q99986 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
VRK1Q99986 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC12.83□□□□□ -0.36
VRK1Q99986 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
VRK1Q99986 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC12.83□□□□□ -0.36
VRK1Q99986 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC12.83□□□□□ -0.36
VRK1Q99986 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
VRK1Q99986 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
VRK1Q99986 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC12.83□□□□□ -0.36
VRK1Q99986 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
VRK1Q99986 KSR1-204ENST00000398988 7237 ntAPPRIS P2 TSL 5 BASIC12.82□□□□□ -0.36
VRK1Q99986 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC12.82□□□□□ -0.36
VRK1Q99986 RET-205ENST00000615310 4337 ntTSL 5 BASIC12.82□□□□□ -0.36
VRK1Q99986 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
VRK1Q99986 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
VRK1Q99986 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
VRK1Q99986 MIRLET7BHG-201ENST00000360737 4560 ntTSL 2 BASIC12.82□□□□□ -0.36
VRK1Q99986 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC12.82□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms