Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 AACSP1-202ENST00000521412 1095 ntBASIC8.56□□□□□ -1.04
APOBP04114 AC078878.2-201ENST00000543451 286 ntTSL 5 BASIC8.56□□□□□ -1.04
APOBP04114 AC126177.4-201ENST00000547452 731 ntTSL 5 BASIC8.56□□□□□ -1.04
APOBP04114 USP39-207ENST00000450066 2086 ntTSL 2 BASIC8.56□□□□□ -1.04
APOBP04114 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
APOBP04114 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC8.56□□□□□ -1.04
APOBP04114 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
APOBP04114 DNAJB6-204ENST00000429029 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC8.56□□□□□ -1.04
APOBP04114 ERCC4-207ENST00000575156 2073 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
APOBP04114 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC8.56□□□□□ -1.04
APOBP04114 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC8.56□□□□□ -1.04
APOBP04114 SDCBP2P1-201ENST00000416115 614 ntBASIC8.56□□□□□ -1.04
APOBP04114 AP001107.9-202ENST00000531602 613 ntTSL 2 BASIC8.56□□□□□ -1.04
APOBP04114 AC063977.2-201ENST00000601996 421 ntBASIC8.56□□□□□ -1.04
APOBP04114 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
APOBP04114 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
APOBP04114 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC8.56□□□□□ -1.04
APOBP04114 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
APOBP04114 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
APOBP04114 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
APOBP04114 RANGRF-201ENST00000226105 1009 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
APOBP04114 SLIRP-201ENST00000238688 394 ntAPPRIS P3 TSL 2 BASIC8.56□□□□□ -1.04
APOBP04114 TXLNGY-202ENST00000407724 1000 ntTSL 3 BASIC8.56□□□□□ -1.04
APOBP04114 TMCO1-203ENST00000464650 1100 ntTSL 2 BASIC8.56□□□□□ -1.04
APOBP04114 AC068858.1-201ENST00000525114 1239 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
APOBP04114 AP001102.1-201ENST00000528959 409 ntBASIC8.56□□□□□ -1.04
APOBP04114 ALG10-202ENST00000538927 571 ntTSL 5 BASIC8.56□□□□□ -1.04
APOBP04114 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC8.56□□□□□ -1.04
APOBP04114 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
APOBP04114 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
APOBP04114 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC8.56□□□□□ -1.04
APOBP04114 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC8.56□□□□□ -1.04
APOBP04114 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
APOBP04114 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
APOBP04114 TMEM182-201ENST00000409173 3198 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
APOBP04114 KRT8P25-201ENST00000473150 1456 ntBASIC8.56□□□□□ -1.04
APOBP04114 PSMB8-201ENST00000374881 1351 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
APOBP04114 CATSPERE-202ENST00000366533 3019 ntAPPRIS P3 TSL 1 (best) BASIC8.56□□□□□ -1.04
APOBP04114 LINC02449-201ENST00000304751 795 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
APOBP04114 S100A7A-202ENST00000368728 440 ntAPPRIS P1 TSL 5 BASIC8.56□□□□□ -1.04
APOBP04114 TMEM154-202ENST00000504064 878 ntAPPRIS ALT2 TSL 1 (best) BASIC8.56□□□□□ -1.04
APOBP04114 C9orf135-205ENST00000527647 748 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
APOBP04114 CCDC42-202ENST00000539522 1087 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
APOBP04114 TMEM241-208ENST00000542162 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC8.56□□□□□ -1.04
APOBP04114 AP003170.2-201ENST00000544730 786 ntBASIC8.56□□□□□ -1.04
APOBP04114 NPTN-205ENST00000563691 1214 ntAPPRIS ALT2 TSL 1 (best) BASIC8.56□□□□□ -1.04
APOBP04114 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
APOBP04114 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
APOBP04114 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
APOBP04114 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
APOBP04114 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC8.55□□□□□ -1.04
APOBP04114 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC8.55□□□□□ -1.04
APOBP04114 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
APOBP04114 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
APOBP04114 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
APOBP04114 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
APOBP04114 SERPIND1-202ENST00000406799 1798 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
APOBP04114 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC8.55□□□□□ -1.04
APOBP04114 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC8.55□□□□□ -1.04
APOBP04114 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC8.55□□□□□ -1.04
APOBP04114 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
APOBP04114 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC8.55□□□□□ -1.04
APOBP04114 LINC00544-201ENST00000400540 1031 ntTSL 5 BASIC8.55□□□□□ -1.04
APOBP04114 AC010547.1-202ENST00000567341 230 ntTSL 2 BASIC8.55□□□□□ -1.04
APOBP04114 PLA2G4C-AS1-203ENST00000601950 454 ntTSL 3 BASIC8.55□□□□□ -1.04
APOBP04114 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
APOBP04114 AC124319.4-201ENST00000622931 2161 ntBASIC8.55□□□□□ -1.04
APOBP04114 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC8.55□□□□□ -1.04
APOBP04114 AGK-211ENST00000629555 2765 ntTSL 5 BASIC8.55□□□□□ -1.04
APOBP04114 EDEM2-201ENST00000374491 1756 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
APOBP04114 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
APOBP04114 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
APOBP04114 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC8.55□□□□□ -1.04
APOBP04114 AC105917.1-201ENST00000506637 2539 ntBASIC8.55□□□□□ -1.04
APOBP04114 CICP6-201ENST00000457191 2729 ntBASIC8.55□□□□□ -1.04
APOBP04114 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC8.55□□□□□ -1.04
APOBP04114 GOLGA8G-203ENST00000525590 2009 ntAPPRIS P1 TSL 5 BASIC8.55□□□□□ -1.04
APOBP04114 GOLGA8F-202ENST00000532622 2009 ntAPPRIS P5 TSL 5 BASIC8.55□□□□□ -1.04
APOBP04114 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
APOBP04114 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC8.55□□□□□ -1.04
APOBP04114 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
APOBP04114 PRSS46-201ENST00000463091 982 ntAPPRIS P1 TSL 4 BASIC8.55□□□□□ -1.04
APOBP04114 RN7SL22P-201ENST00000471800 269 ntBASIC8.55□□□□□ -1.04
APOBP04114 HNRNPA1P72-201ENST00000529511 967 ntBASIC8.55□□□□□ -1.04
APOBP04114 U62317.4-201ENST00000609758 448 ntBASIC8.55□□□□□ -1.04
APOBP04114 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC8.55□□□□□ -1.04
APOBP04114 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC8.55□□□□□ -1.04
APOBP04114 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
APOBP04114 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
APOBP04114 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
APOBP04114 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
APOBP04114 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
APOBP04114 SLC7A8-214ENST00000621729 1371 ntTSL 5 BASIC8.55□□□□□ -1.04
APOBP04114 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
APOBP04114 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
APOBP04114 WFDC3-201ENST00000243938 1000 ntAPPRIS P2 TSL 1 (best) BASIC8.55□□□□□ -1.04
APOBP04114 FANK1-203ENST00000368693 1294 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
APOBP04114 S100A6-202ENST00000368720 673 ntAPPRIS P1 TSL 3 BASIC8.55□□□□□ -1.04
APOBP04114 PHBP3-201ENST00000412562 819 ntBASIC8.55□□□□□ -1.04
APOBP04114 HAX1-204ENST00000457918 914 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms