Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 LINC02333-201ENST00000603464 852 ntTSL 3 BASIC17.7■□□□□ 0.42
RC3H1Q5TC82 AC010531.8-201ENST00000623341 685 ntBASIC17.7■□□□□ 0.42
RC3H1Q5TC82 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RC3H1Q5TC82 TBC1D3P2-201ENST00000339120 1513 ntTSL 2 BASIC17.7■□□□□ 0.42
RC3H1Q5TC82 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
RC3H1Q5TC82 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RC3H1Q5TC82 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC17.7■□□□□ 0.42
RC3H1Q5TC82 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RC3H1Q5TC82 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RC3H1Q5TC82 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
RC3H1Q5TC82 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RC3H1Q5TC82 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
RC3H1Q5TC82 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
RC3H1Q5TC82 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
RC3H1Q5TC82 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC17.69■□□□□ 0.42
RC3H1Q5TC82 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC17.69■□□□□ 0.42
RC3H1Q5TC82 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC17.69■□□□□ 0.42
RC3H1Q5TC82 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
RC3H1Q5TC82 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RC3H1Q5TC82 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
RC3H1Q5TC82 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RC3H1Q5TC82 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RC3H1Q5TC82 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RC3H1Q5TC82 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC17.69■□□□□ 0.42
RC3H1Q5TC82 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RC3H1Q5TC82 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RC3H1Q5TC82 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RC3H1Q5TC82 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC17.69■□□□□ 0.42
RC3H1Q5TC82 CTSL-202ENST00000342020 933 ntTSL 2 BASIC17.69■□□□□ 0.42
RC3H1Q5TC82 PITHD1-202ENST00000374524 1292 ntTSL 3 BASIC17.69■□□□□ 0.42
RC3H1Q5TC82 TRBV5-7-201ENST00000390378 343 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
RC3H1Q5TC82 MPV17-207ENST00000403262 665 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RC3H1Q5TC82 AC004522.1-201ENST00000419978 654 ntBASIC17.69■□□□□ 0.42
RC3H1Q5TC82 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC17.69■□□□□ 0.42
RC3H1Q5TC82 CDK2-203ENST00000440311 1031 ntTSL 2 BASIC17.69■□□□□ 0.42
RC3H1Q5TC82 SOD2-205ENST00000444946 917 ntTSL 2 BASIC17.69■□□□□ 0.42
RC3H1Q5TC82 WNT5A-205ENST00000497027 1299 ntTSL 2 BASIC17.69■□□□□ 0.42
RC3H1Q5TC82 SRP54-AS1-204ENST00000556705 580 ntTSL 2 BASIC17.69■□□□□ 0.42
RC3H1Q5TC82 ETV4-208ENST00000586826 917 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RC3H1Q5TC82 AC026120.2-201ENST00000617239 309 ntBASIC17.69■□□□□ 0.42
RC3H1Q5TC82 Metazoa_SRP.128-201ENST00000620543 314 ntBASIC17.69■□□□□ 0.42
RC3H1Q5TC82 ADH1B-207ENST00000639454 1210 ntTSL 5 BASIC17.69■□□□□ 0.42
RC3H1Q5TC82 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RC3H1Q5TC82 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RC3H1Q5TC82 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC17.69■□□□□ 0.42
RC3H1Q5TC82 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC17.69■□□□□ 0.42
RC3H1Q5TC82 SNCAIP-206ENST00000414317 1591 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RC3H1Q5TC82 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC17.69■□□□□ 0.42
RC3H1Q5TC82 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RC3H1Q5TC82 NNMT-203ENST00000535401 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RC3H1Q5TC82 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RC3H1Q5TC82 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RC3H1Q5TC82 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC17.68■□□□□ 0.42
RC3H1Q5TC82 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC17.68■□□□□ 0.42
RC3H1Q5TC82 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC17.68■□□□□ 0.42
RC3H1Q5TC82 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
RC3H1Q5TC82 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
RC3H1Q5TC82 MTHFR-210ENST00000641407 2387 ntBASIC17.68■□□□□ 0.42
RC3H1Q5TC82 ZFP1-201ENST00000332307 1502 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RC3H1Q5TC82 PPP1R32-201ENST00000338608 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RC3H1Q5TC82 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RC3H1Q5TC82 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RC3H1Q5TC82 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RC3H1Q5TC82 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RC3H1Q5TC82 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC17.68■□□□□ 0.42
RC3H1Q5TC82 COX8A-201ENST00000314133 507 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RC3H1Q5TC82 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC17.68■□□□□ 0.42
RC3H1Q5TC82 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
RC3H1Q5TC82 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC17.68■□□□□ 0.42
RC3H1Q5TC82 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC17.68■□□□□ 0.42
RC3H1Q5TC82 TMEM14B-201ENST00000379530 787 ntTSL 2 BASIC17.68■□□□□ 0.42
RC3H1Q5TC82 KRT8P30-201ENST00000432100 650 ntBASIC17.68■□□□□ 0.42
RC3H1Q5TC82 ANKRD2-204ENST00000455090 1072 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RC3H1Q5TC82 IGHEP1-201ENST00000521393 651 ntBASIC17.68■□□□□ 0.42
RC3H1Q5TC82 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RC3H1Q5TC82 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RC3H1Q5TC82 RBFOX3-206ENST00000582043 1143 ntTSL 5 BASIC17.68■□□□□ 0.42
RC3H1Q5TC82 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RC3H1Q5TC82 AC004686.1-201ENST00000605113 538 ntBASIC17.68■□□□□ 0.42
RC3H1Q5TC82 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RC3H1Q5TC82 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RC3H1Q5TC82 AC023157.3-201ENST00000619086 2088 ntBASIC17.68■□□□□ 0.42
RC3H1Q5TC82 GPI-205ENST00000586425 1799 ntTSL 5 BASIC17.68■□□□□ 0.42
RC3H1Q5TC82 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RC3H1Q5TC82 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RC3H1Q5TC82 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
RC3H1Q5TC82 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RC3H1Q5TC82 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RC3H1Q5TC82 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RC3H1Q5TC82 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RC3H1Q5TC82 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RC3H1Q5TC82 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RC3H1Q5TC82 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC17.67■□□□□ 0.42
RC3H1Q5TC82 WASH7P-201ENST00000488147 1351 ntBASIC17.67■□□□□ 0.42
RC3H1Q5TC82 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RC3H1Q5TC82 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
RC3H1Q5TC82 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RC3H1Q5TC82 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC17.67■□□□□ 0.42
RC3H1Q5TC82 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC17.67■□□□□ 0.42
RC3H1Q5TC82 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms