Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 GOLGA8VP-201ENST00000559009 1798 ntBASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 C11orf53-201ENST00000280325 1208 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 IFITM1-201ENST00000328221 844 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 IFITM1-202ENST00000408968 855 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 AL353658.1-201ENST00000436263 789 ntTSL 2 BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 TMEM222-203ENST00000464813 1071 ntTSL 2 BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 AC100858.1-201ENST00000514059 1228 ntBASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 AC078852.1-201ENST00000515842 441 ntTSL 3 BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 SMAD7-208ENST00000591805 1152 ntTSL 2 BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 BX322534.1-201ENST00000635574 241 ntBASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 AC215524.1-201ENST00000635696 241 ntBASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 AKR1B1-201ENST00000285930 1409 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 CHRNA1-205ENST00000409542 1460 ntTSL 3 BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 DEDD-202ENST00000368006 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 AC232323.1-201ENST00000540724 2099 ntBASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 RHOC-207ENST00000369638 1028 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 AC103923.1-201ENST00000453229 1228 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 RN7SL375P-201ENST00000492442 298 ntBASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 CHTF8-207ENST00000520529 475 ntTSL 2 BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 CD44-224ENST00000526669 870 ntTSL 5 BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 AC007656.1-201ENST00000552238 573 ntTSL 4 BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 CBR3-AS1-206ENST00000608632 659 ntTSL 5 BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 AC097359.2-201ENST00000604992 2389 ntBASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC88AQ3V6T2 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC17.17■□□□□ 0.34
CCDC88AQ3V6T2 GOLGA8UP-201ENST00000527159 1755 ntBASIC17.17■□□□□ 0.34
CCDC88AQ3V6T2 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC88AQ3V6T2 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
CCDC88AQ3V6T2 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC17.17■□□□□ 0.34
CCDC88AQ3V6T2 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
CCDC88AQ3V6T2 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC17.17■□□□□ 0.34
CCDC88AQ3V6T2 TPO-203ENST00000346956 2923 ntTSL 5 BASIC17.17■□□□□ 0.34
CCDC88AQ3V6T2 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC88AQ3V6T2 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC88AQ3V6T2 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC88AQ3V6T2 MPV17-207ENST00000403262 665 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC88AQ3V6T2 AL121787.1-202ENST00000445838 876 ntTSL 5 BASIC17.17■□□□□ 0.34
CCDC88AQ3V6T2 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC17.17■□□□□ 0.34
CCDC88AQ3V6T2 SNRPD2P2-201ENST00000473818 333 ntBASIC17.17■□□□□ 0.34
CCDC88AQ3V6T2 ALG1L15P-201ENST00000482834 794 ntBASIC17.17■□□□□ 0.34
CCDC88AQ3V6T2 ZFP1-207ENST00000567481 493 ntTSL 4 BASIC17.17■□□□□ 0.34
CCDC88AQ3V6T2 MYMX-201ENST00000573382 817 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
CCDC88AQ3V6T2 MIR4254-201ENST00000581063 76 ntBASIC17.17■□□□□ 0.34
CCDC88AQ3V6T2 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC17.17■□□□□ 0.34
CCDC88AQ3V6T2 AP000356.3-203ENST00000614808 601 ntTSL 3 BASIC17.17■□□□□ 0.34
CCDC88AQ3V6T2 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC17.17■□□□□ 0.34
CCDC88AQ3V6T2 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC17.17■□□□□ 0.34
CCDC88AQ3V6T2 AC008536.3-201ENST00000623282 1599 ntBASIC17.17■□□□□ 0.34
CCDC88AQ3V6T2 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC88AQ3V6T2 AMT-256ENST00000638063 1783 ntTSL 5 BASIC17.17■□□□□ 0.34
CCDC88AQ3V6T2 BX640514.1-201ENST00000583223 1918 ntBASIC17.17■□□□□ 0.34
CCDC88AQ3V6T2 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC88AQ3V6T2 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC17.17■□□□□ 0.34
CCDC88AQ3V6T2 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC88AQ3V6T2 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC88AQ3V6T2 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC88AQ3V6T2 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
CCDC88AQ3V6T2 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 SARS-202ENST00000369923 1882 ntTSL 5 BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 CYB5R2-201ENST00000299498 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 SIRPB3P-201ENST00000340424 1216 ntBASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 SSR4-202ENST00000370085 526 ntTSL 2 BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 IFNA2-201ENST00000380206 1135 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 GGTLC4P-201ENST00000402176 664 ntBASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms