Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 AL583805.1-201ENST00000391389 531 ntBASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 DNAJB1P1-201ENST00000429417 1024 ntBASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 NPM1P43-201ENST00000558669 786 ntBASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 PHBP15-201ENST00000574228 665 ntBASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 MIR4750-201ENST00000584564 56 ntBASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 RN7SL736P-201ENST00000613111 269 ntBASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 LINC02228-204ENST00000642115 2962 ntBASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 AHCYP4-201ENST00000419201 1315 ntBASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC3Q9BQI4 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 MTHFR-210ENST00000641407 2387 ntBASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 PASK-201ENST00000234040 4572 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 RPS9P1-201ENST00000419943 583 ntBASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 HPGD-203ENST00000422112 805 ntTSL 2 BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 AP000358.1-201ENST00000456260 156 ntBASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 TPM1-223ENST00000560445 485 ntTSL 3 BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 HPN-206ENST00000597419 1212 ntTSL 5 BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 AC087045.2-201ENST00000606279 1003 ntBASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 AC015688.4-201ENST00000580780 1647 ntBASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 KRT18P9-201ENST00000604826 1300 ntBASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms