Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
RPL39P62891 AL662799.1-202ENST00000614205 422 ntBASIC10.26□□□□□ -0.77
RPL39P62891 LINC01285-204ENST00000634601 1947 ntTSL 5 BASIC10.26□□□□□ -0.77
RPL39P62891 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC10.26□□□□□ -0.77
RPL39P62891 BDH1-202ENST00000392378 3455 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
RPL39P62891 PTPN1-202ENST00000541713 3469 ntTSL 2 BASIC10.26□□□□□ -0.77
RPL39P62891 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
RPL39P62891 LIMK1-208ENST00000538333 2170 ntTSL 2 BASIC10.26□□□□□ -0.77
RPL39P62891 NFATC2-202ENST00000396009 7437 ntAPPRIS P3 TSL 1 (best) BASIC10.26□□□□□ -0.77
RPL39P62891 NR4A2-209ENST00000426264 2642 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
RPL39P62891 BIRC2-208ENST00000532672 2617 ntAPPRIS ALT2 TSL 5 BASIC10.26□□□□□ -0.77
RPL39P62891 SUCO-202ENST00000367723 5916 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
RPL39P62891 ABCA17P-202ENST00000469908 4188 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
RPL39P62891 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
RPL39P62891 IGFN1-201ENST00000295591 4439 ntAPPRIS ALT2 TSL 5 BASIC10.26□□□□□ -0.77
RPL39P62891 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
RPL39P62891 PBXIP1-203ENST00000368465 3144 ntAPPRIS ALT2 TSL 2 BASIC10.26□□□□□ -0.77
RPL39P62891 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
RPL39P62891 MKX-201ENST00000375790 3846 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
RPL39P62891 AL022313.4-201ENST00000562756 2046 ntBASIC10.26□□□□□ -0.77
RPL39P62891 ST5-256ENST00000534127 4545 ntAPPRIS P4 TSL 1 (best) BASIC10.26□□□□□ -0.77
RPL39P62891 COL1A2-213ENST00000620463 4523 ntTSL 5 BASIC10.26□□□□□ -0.77
RPL39P62891 PIK3R5-220ENST00000623421 4318 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
RPL39P62891 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC10.26□□□□□ -0.77
RPL39P62891 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC10.26□□□□□ -0.77
RPL39P62891 HIC2-203ENST00000443632 6940 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
RPL39P62891 IKZF1-204ENST00000349824 5757 ntTSL 5 BASIC10.26□□□□□ -0.77
RPL39P62891 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
RPL39P62891 PDE2A-218ENST00000540345 3027 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
RPL39P62891 AL645937.6-201ENST00000641122 3727 ntBASIC10.25□□□□□ -0.77
RPL39P62891 ATXN2L-205ENST00000395547 3981 ntAPPRIS P4 TSL 1 (best) BASIC10.25□□□□□ -0.77
RPL39P62891 AMDHD2-202ENST00000302956 3273 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
RPL39P62891 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
RPL39P62891 NCS1-201ENST00000372398 4991 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
RPL39P62891 NECAP2-202ENST00000443980 1929 ntTSL 2 BASIC10.25□□□□□ -0.77
RPL39P62891 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
RPL39P62891 OR2C3-204ENST00000641802 8509 ntAPPRIS P1 BASIC10.25□□□□□ -0.77
RPL39P62891 SCAF4-201ENST00000286835 4193 ntAPPRIS P3 TSL 1 (best) BASIC10.25□□□□□ -0.77
RPL39P62891 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC10.25□□□□□ -0.77
RPL39P62891 VHL-201ENST00000256474 3737 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
RPL39P62891 CCT6P3-201ENST00000419314 3702 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
RPL39P62891 SEC14L5-201ENST00000251170 6459 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
RPL39P62891 CTTN-201ENST00000301843 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
RPL39P62891 TMEM173-201ENST00000330794 1771 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
RPL39P62891 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC10.25□□□□□ -0.77
RPL39P62891 LRRC59-203ENST00000576448 1531 ntBASIC10.25□□□□□ -0.77
RPL39P62891 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
RPL39P62891 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
RPL39P62891 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC10.25□□□□□ -0.77
RPL39P62891 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC10.25□□□□□ -0.77
RPL39P62891 SERF2-209ENST00000409646 559 ntTSL 4 BASIC10.25□□□□□ -0.77
RPL39P62891 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC10.25□□□□□ -0.77
RPL39P62891 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC10.25□□□□□ -0.77
RPL39P62891 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
RPL39P62891 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC10.25□□□□□ -0.77
RPL39P62891 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC10.25□□□□□ -0.77
RPL39P62891 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
RPL39P62891 GCOM2-201ENST00000509133 1104 ntBASIC10.25□□□□□ -0.77
RPL39P62891 SPDYE18-201ENST00000510091 1050 ntBASIC10.25□□□□□ -0.77
RPL39P62891 AP001582.1-201ENST00000525856 295 ntBASIC10.25□□□□□ -0.77
RPL39P62891 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC10.25□□□□□ -0.77
RPL39P62891 DAD1-205ENST00000543337 501 ntTSL 3 BASIC10.25□□□□□ -0.77
RPL39P62891 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
RPL39P62891 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC10.25□□□□□ -0.77
RPL39P62891 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC10.25□□□□□ -0.77
RPL39P62891 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC10.25□□□□□ -0.77
RPL39P62891 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC10.25□□□□□ -0.77
RPL39P62891 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC10.25□□□□□ -0.77
RPL39P62891 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC10.25□□□□□ -0.77
RPL39P62891 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
RPL39P62891 TRAK1-210ENST00000613405 4672 ntTSL 2 BASIC10.25□□□□□ -0.77
RPL39P62891 AC005394.2-201ENST00000592347 3113 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
RPL39P62891 CCT6B-201ENST00000314144 1838 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
RPL39P62891 EPN2-205ENST00000395626 2863 ntTSL 2 BASIC10.25□□□□□ -0.77
RPL39P62891 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
RPL39P62891 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC10.25□□□□□ -0.77
RPL39P62891 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC10.25□□□□□ -0.77
RPL39P62891 CCND3-215ENST00000511642 2394 ntTSL 2 BASIC10.25□□□□□ -0.77
RPL39P62891 PAX8-203ENST00000348715 3966 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
RPL39P62891 AL138725.1-201ENST00000407347 1314 ntBASIC10.25□□□□□ -0.77
RPL39P62891 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC10.25□□□□□ -0.77
RPL39P62891 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
RPL39P62891 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC10.25□□□□□ -0.77
RPL39P62891 CCDC57-202ENST00000389641 3000 ntAPPRIS ALT2 TSL 5 BASIC10.25□□□□□ -0.77
RPL39P62891 CCDC57-206ENST00000392347 3000 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
RPL39P62891 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
RPL39P62891 AL358334.2-201ENST00000553648 4714 ntTSL 2 BASIC10.25□□□□□ -0.77
RPL39P62891 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
RPL39P62891 UNK-205ENST00000589666 3925 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
RPL39P62891 GATC-203ENST00000551765 4244 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
RPL39P62891 MED6-201ENST00000256379 1995 ntAPPRIS P2 TSL 1 (best) BASIC10.25□□□□□ -0.77
RPL39P62891 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
RPL39P62891 ZNF683-205ENST00000436292 1712 ntAPPRIS ALT2 TSL 5 BASIC10.24□□□□□ -0.77
RPL39P62891 MGAT1-205ENST00000446023 3175 ntAPPRIS P1 TSL 2 BASIC10.24□□□□□ -0.77
RPL39P62891 TCF12-201ENST00000267811 6061 ntAPPRIS ALT1 TSL 1 (best) BASIC10.24□□□□□ -0.77
RPL39P62891 OS9-206ENST00000435406 2346 ntTSL 2 BASIC10.24□□□□□ -0.77
RPL39P62891 SUGP2-203ENST00000452918 6176 ntAPPRIS P3 TSL 1 (best) BASIC10.24□□□□□ -0.77
RPL39P62891 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
RPL39P62891 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC10.24□□□□□ -0.77
RPL39P62891 EOGT-202ENST00000383701 4731 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms