Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC105129.2-201ENST00000559536 390 ntBASIC16.42■□□□□ 0.22
SMARCA1P28370 CMC2-204ENST00000562713 573 ntTSL 3 BASIC16.42■□□□□ 0.22
SMARCA1P28370 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC16.42■□□□□ 0.22
SMARCA1P28370 CMC2-209ENST00000565108 399 ntTSL 2 BASIC16.42■□□□□ 0.22
SMARCA1P28370 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC16.42■□□□□ 0.22
SMARCA1P28370 SNX12-206ENST00000622259 661 ntTSL 5 BASIC16.42■□□□□ 0.22
SMARCA1P28370 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC16.42■□□□□ 0.22
SMARCA1P28370 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SMARCA1P28370 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SMARCA1P28370 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SMARCA1P28370 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC16.42■□□□□ 0.22
SMARCA1P28370 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SMARCA1P28370 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SMARCA1P28370 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC16.42■□□□□ 0.22
SMARCA1P28370 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC16.42■□□□□ 0.22
SMARCA1P28370 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SMARCA1P28370 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
SMARCA1P28370 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC16.41■□□□□ 0.22
SMARCA1P28370 AC139749.1-202ENST00000617529 3139 ntBASIC16.41■□□□□ 0.22
SMARCA1P28370 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SMARCA1P28370 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SMARCA1P28370 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SMARCA1P28370 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
SMARCA1P28370 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
SMARCA1P28370 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SMARCA1P28370 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SMARCA1P28370 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC16.41■□□□□ 0.22
SMARCA1P28370 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SMARCA1P28370 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SMARCA1P28370 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SMARCA1P28370 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SMARCA1P28370 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SMARCA1P28370 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
SMARCA1P28370 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SMARCA1P28370 MIR645-201ENST00000385283 94 ntBASIC16.41■□□□□ 0.22
SMARCA1P28370 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SMARCA1P28370 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC16.41■□□□□ 0.22
SMARCA1P28370 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC16.41■□□□□ 0.22
SMARCA1P28370 AC134698.3-201ENST00000523880 214 ntBASIC16.41■□□□□ 0.22
SMARCA1P28370 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
SMARCA1P28370 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC16.41■□□□□ 0.22
SMARCA1P28370 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC16.41■□□□□ 0.22
SMARCA1P28370 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
SMARCA1P28370 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC16.41■□□□□ 0.22
SMARCA1P28370 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
SMARCA1P28370 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SMARCA1P28370 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC16.41■□□□□ 0.22
SMARCA1P28370 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC16.41■□□□□ 0.22
SMARCA1P28370 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SMARCA1P28370 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
SMARCA1P28370 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SMARCA1P28370 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SMARCA1P28370 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SMARCA1P28370 RCC2P1-201ENST00000452257 1476 ntBASIC16.41■□□□□ 0.22
SMARCA1P28370 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SMARCA1P28370 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SMARCA1P28370 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SMARCA1P28370 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
SMARCA1P28370 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SMARCA1P28370 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
SMARCA1P28370 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC16.4■□□□□ 0.22
SMARCA1P28370 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SMARCA1P28370 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC16.4■□□□□ 0.22
SMARCA1P28370 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC16.4■□□□□ 0.22
SMARCA1P28370 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
SMARCA1P28370 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SMARCA1P28370 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SMARCA1P28370 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
SMARCA1P28370 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SMARCA1P28370 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SMARCA1P28370 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SMARCA1P28370 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SMARCA1P28370 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SMARCA1P28370 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC16.4■□□□□ 0.22
SMARCA1P28370 FTH1P22-201ENST00000456305 520 ntBASIC16.4■□□□□ 0.22
SMARCA1P28370 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC16.4■□□□□ 0.22
SMARCA1P28370 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC16.4■□□□□ 0.22
SMARCA1P28370 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC16.4■□□□□ 0.22
SMARCA1P28370 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
SMARCA1P28370 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC16.4■□□□□ 0.22
SMARCA1P28370 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC16.4■□□□□ 0.22
SMARCA1P28370 MIR3907-201ENST00000579424 151 ntBASIC16.4■□□□□ 0.22
SMARCA1P28370 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC16.4■□□□□ 0.22
SMARCA1P28370 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC16.4■□□□□ 0.22
SMARCA1P28370 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SMARCA1P28370 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
SMARCA1P28370 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
SMARCA1P28370 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SMARCA1P28370 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC16.4■□□□□ 0.22
SMARCA1P28370 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SMARCA1P28370 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SMARCA1P28370 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SMARCA1P28370 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SMARCA1P28370 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SMARCA1P28370 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SMARCA1P28370 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
SMARCA1P28370 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
SMARCA1P28370 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC16.4■□□□□ 0.22
SMARCA1P28370 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SMARCA1P28370 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms