Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
USF1P22415 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
USF1P22415 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
USF1P22415 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
USF1P22415 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC12.32□□□□□ -0.44
USF1P22415 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
USF1P22415 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC12.32□□□□□ -0.44
USF1P22415 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
USF1P22415 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
USF1P22415 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
USF1P22415 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC12.31□□□□□ -0.44
USF1P22415 FAM90A7P-201ENST00000382628 1395 ntBASIC12.31□□□□□ -0.44
USF1P22415 FAM90A23P-201ENST00000400136 1395 ntBASIC12.31□□□□□ -0.44
USF1P22415 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC12.31□□□□□ -0.44
USF1P22415 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 SALL4P5-201ENST00000419001 1760 ntBASIC12.31□□□□□ -0.44
USF1P22415 BTBD9-206ENST00000481247 8525 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
USF1P22415 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC12.31□□□□□ -0.44
USF1P22415 TBC1D3J-201ENST00000620719 1426 ntBASIC12.31□□□□□ -0.44
USF1P22415 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
USF1P22415 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 LAMA3-202ENST00000313654 10661 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
USF1P22415 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC12.31□□□□□ -0.44
USF1P22415 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC12.31□□□□□ -0.44
USF1P22415 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC12.31□□□□□ -0.44
USF1P22415 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC12.31□□□□□ -0.44
USF1P22415 AC069218.1-201ENST00000435269 762 ntBASIC12.31□□□□□ -0.44
USF1P22415 NOC2LP1-201ENST00000450578 752 ntBASIC12.31□□□□□ -0.44
USF1P22415 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 CFL1-214ENST00000534769 758 ntTSL 2 BASIC12.31□□□□□ -0.44
USF1P22415 NAT9-211ENST00000580632 799 ntTSL 3 BASIC12.31□□□□□ -0.44
USF1P22415 MIR4754-201ENST00000582477 89 ntBASIC12.31□□□□□ -0.44
USF1P22415 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC12.31□□□□□ -0.44
USF1P22415 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC12.31□□□□□ -0.44
USF1P22415 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC12.31□□□□□ -0.44
USF1P22415 AC103691.2-201ENST00000618824 433 ntBASIC12.31□□□□□ -0.44
USF1P22415 COX6A1P2-201ENST00000620597 330 ntBASIC12.31□□□□□ -0.44
USF1P22415 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 Z98259.2-201ENST00000641583 609 ntBASIC12.31□□□□□ -0.44
USF1P22415 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC12.31□□□□□ -0.44
USF1P22415 AMER2-201ENST00000357816 10055 ntTSL 2 BASIC12.31□□□□□ -0.44
USF1P22415 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 SLC9A8-201ENST00000361573 6094 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC12.31□□□□□ -0.44
USF1P22415 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 AC003102.2-201ENST00000589195 1469 ntBASIC12.31□□□□□ -0.44
USF1P22415 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
USF1P22415 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC12.31□□□□□ -0.44
USF1P22415 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC12.31□□□□□ -0.44
USF1P22415 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
USF1P22415 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC12.31□□□□□ -0.44
USF1P22415 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC12.31□□□□□ -0.44
USF1P22415 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
USF1P22415 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
USF1P22415 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
USF1P22415 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC12.31□□□□□ -0.44
USF1P22415 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
USF1P22415 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
USF1P22415 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC12.3□□□□□ -0.44
USF1P22415 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
USF1P22415 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
USF1P22415 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
USF1P22415 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC12.3□□□□□ -0.44
USF1P22415 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
USF1P22415 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
USF1P22415 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC12.3□□□□□ -0.44
USF1P22415 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC12.3□□□□□ -0.44
USF1P22415 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
USF1P22415 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
USF1P22415 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 60.9 ms