Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RHBDL3P58872 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC16.82■□□□□ 0.28
RHBDL3P58872 RN7SL818P-201ENST00000485099 259 ntBASIC16.82■□□□□ 0.28
RHBDL3P58872 HINT1-205ENST00000508488 703 ntTSL 2 BASIC16.82■□□□□ 0.28
RHBDL3P58872 AC084752.1-201ENST00000509766 622 ntBASIC16.82■□□□□ 0.28
RHBDL3P58872 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
RHBDL3P58872 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC16.82■□□□□ 0.28
RHBDL3P58872 NT5C-204ENST00000578337 582 ntTSL 2 BASIC16.82■□□□□ 0.28
RHBDL3P58872 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC16.82■□□□□ 0.28
RHBDL3P58872 AP005264.5-201ENST00000590066 467 ntBASIC16.82■□□□□ 0.28
RHBDL3P58872 RN7SL725P-201ENST00000606439 259 ntBASIC16.82■□□□□ 0.28
RHBDL3P58872 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RHBDL3P58872 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
RHBDL3P58872 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
RHBDL3P58872 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
RHBDL3P58872 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RHBDL3P58872 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
RHBDL3P58872 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RHBDL3P58872 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
RHBDL3P58872 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RHBDL3P58872 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
RHBDL3P58872 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
RHBDL3P58872 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RHBDL3P58872 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RHBDL3P58872 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RHBDL3P58872 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
RHBDL3P58872 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RHBDL3P58872 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC16.81■□□□□ 0.28
RHBDL3P58872 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
RHBDL3P58872 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC16.81■□□□□ 0.28
RHBDL3P58872 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC16.81■□□□□ 0.28
RHBDL3P58872 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.81■□□□□ 0.28
RHBDL3P58872 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RHBDL3P58872 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC16.81■□□□□ 0.28
RHBDL3P58872 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RHBDL3P58872 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC16.81■□□□□ 0.28
RHBDL3P58872 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
RHBDL3P58872 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC16.81■□□□□ 0.28
RHBDL3P58872 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RHBDL3P58872 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RHBDL3P58872 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC16.81■□□□□ 0.28
RHBDL3P58872 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RHBDL3P58872 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RHBDL3P58872 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
RHBDL3P58872 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RHBDL3P58872 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RHBDL3P58872 OR52M2P-201ENST00000414298 959 ntBASIC16.81■□□□□ 0.28
RHBDL3P58872 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RHBDL3P58872 STK24P1-201ENST00000455035 1291 ntBASIC16.81■□□□□ 0.28
RHBDL3P58872 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RHBDL3P58872 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC16.81■□□□□ 0.28
RHBDL3P58872 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC16.81■□□□□ 0.28
RHBDL3P58872 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
RHBDL3P58872 AC226150.1-201ENST00000544259 466 ntBASIC16.81■□□□□ 0.28
RHBDL3P58872 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC16.81■□□□□ 0.28
RHBDL3P58872 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC16.81■□□□□ 0.28
RHBDL3P58872 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC16.81■□□□□ 0.28
RHBDL3P58872 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC16.81■□□□□ 0.28
RHBDL3P58872 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
RHBDL3P58872 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC16.81■□□□□ 0.28
RHBDL3P58872 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
RHBDL3P58872 LINC00431-202ENST00000636375 159 ntBASIC16.81■□□□□ 0.28
RHBDL3P58872 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
RHBDL3P58872 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.81■□□□□ 0.28
RHBDL3P58872 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC16.81■□□□□ 0.28
RHBDL3P58872 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC16.81■□□□□ 0.28
RHBDL3P58872 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
RHBDL3P58872 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RHBDL3P58872 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC16.81■□□□□ 0.28
RHBDL3P58872 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.81■□□□□ 0.28
RHBDL3P58872 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
RHBDL3P58872 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
RHBDL3P58872 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC16.81■□□□□ 0.28
RHBDL3P58872 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
RHBDL3P58872 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RHBDL3P58872 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
RHBDL3P58872 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RHBDL3P58872 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RHBDL3P58872 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
RHBDL3P58872 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC16.8■□□□□ 0.28
RHBDL3P58872 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
RHBDL3P58872 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
RHBDL3P58872 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
RHBDL3P58872 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC16.8■□□□□ 0.28
RHBDL3P58872 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RHBDL3P58872 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC16.8■□□□□ 0.28
RHBDL3P58872 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC16.8■□□□□ 0.28
RHBDL3P58872 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
RHBDL3P58872 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
RHBDL3P58872 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RHBDL3P58872 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
RHBDL3P58872 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
RHBDL3P58872 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RHBDL3P58872 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC16.8■□□□□ 0.28
RHBDL3P58872 RPL3P2-204ENST00000413027 1203 ntBASIC16.8■□□□□ 0.28
RHBDL3P58872 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC16.8■□□□□ 0.28
RHBDL3P58872 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RHBDL3P58872 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC16.8■□□□□ 0.28
RHBDL3P58872 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC16.8■□□□□ 0.28
RHBDL3P58872 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms