Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
COL4A4P53420 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL4A4P53420 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL4A4P53420 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL4A4P53420 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC14.97□□□□□ -0.01
COL4A4P53420 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC14.97□□□□□ -0.01
COL4A4P53420 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC14.97□□□□□ -0.01
COL4A4P53420 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
COL4A4P53420 AQP7-202ENST00000377425 1068 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
COL4A4P53420 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
COL4A4P53420 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
COL4A4P53420 TMEM222-203ENST00000464813 1071 ntTSL 2 BASIC14.97□□□□□ -0.01
COL4A4P53420 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL4A4P53420 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
COL4A4P53420 EIF5A2-205ENST00000487522 565 ntTSL 3 BASIC14.97□□□□□ -0.01
COL4A4P53420 AC099548.2-201ENST00000491047 571 ntTSL 4 BASIC14.97□□□□□ -0.01
COL4A4P53420 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC14.97□□□□□ -0.01
COL4A4P53420 AAMDC-207ENST00000527134 693 ntTSL 3 BASIC14.97□□□□□ -0.01
COL4A4P53420 GABARAPL1-213ENST00000544284 531 ntTSL 3 BASIC14.97□□□□□ -0.01
COL4A4P53420 RN7SL455P-201ENST00000580629 282 ntBASIC14.97□□□□□ -0.01
COL4A4P53420 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
COL4A4P53420 HAMP-203ENST00000598398 652 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
COL4A4P53420 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC14.96□□□□□ -0.01
COL4A4P53420 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL4A4P53420 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
COL4A4P53420 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL4A4P53420 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL4A4P53420 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL4A4P53420 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL4A4P53420 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL4A4P53420 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
COL4A4P53420 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL4A4P53420 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
COL4A4P53420 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL4A4P53420 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL4A4P53420 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL4A4P53420 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL4A4P53420 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL4A4P53420 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
COL4A4P53420 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC14.96□□□□□ -0.01
COL4A4P53420 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC14.96□□□□□ -0.01
COL4A4P53420 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC14.96□□□□□ -0.01
COL4A4P53420 DDC-213ENST00000617822 1809 ntTSL 3 BASIC14.96□□□□□ -0.01
COL4A4P53420 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC14.96□□□□□ -0.01
COL4A4P53420 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL4A4P53420 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC14.96□□□□□ -0.01
COL4A4P53420 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL4A4P53420 C11orf53-201ENST00000280325 1208 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
COL4A4P53420 SIRPB3P-201ENST00000340424 1216 ntBASIC14.96□□□□□ -0.01
COL4A4P53420 TREM2-202ENST00000373113 1044 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL4A4P53420 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC14.96□□□□□ -0.01
COL4A4P53420 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC14.96□□□□□ -0.01
COL4A4P53420 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC14.96□□□□□ -0.01
COL4A4P53420 C10orf91-203ENST00000490765 462 ntTSL 3 BASIC14.96□□□□□ -0.01
COL4A4P53420 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC14.96□□□□□ -0.01
COL4A4P53420 RPAIN-205ENST00000536255 1057 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
COL4A4P53420 AC091304.3-201ENST00000566500 716 ntBASIC14.96□□□□□ -0.01
COL4A4P53420 TNFRSF12A-204ENST00000573001 648 ntTSL 3 BASIC14.96□□□□□ -0.01
COL4A4P53420 MIR4254-201ENST00000581063 76 ntBASIC14.96□□□□□ -0.01
COL4A4P53420 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC14.96□□□□□ -0.01
COL4A4P53420 AC010531.8-201ENST00000623341 685 ntBASIC14.96□□□□□ -0.01
COL4A4P53420 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC14.96□□□□□ -0.02
COL4A4P53420 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
COL4A4P53420 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC14.96□□□□□ -0.02
COL4A4P53420 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
COL4A4P53420 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC14.95□□□□□ -0.02
COL4A4P53420 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC14.95□□□□□ -0.02
COL4A4P53420 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL4A4P53420 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL4A4P53420 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL4A4P53420 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC14.95□□□□□ -0.02
COL4A4P53420 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL4A4P53420 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL4A4P53420 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
COL4A4P53420 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL4A4P53420 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL4A4P53420 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL4A4P53420 AC147651.3-201ENST00000429872 731 ntTSL 2 BASIC14.95□□□□□ -0.02
COL4A4P53420 GALP-202ENST00000440823 889 ntTSL 5 BASIC14.95□□□□□ -0.02
COL4A4P53420 DLEU2-205ENST00000443587 705 ntTSL 5 BASIC14.95□□□□□ -0.02
COL4A4P53420 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC14.95□□□□□ -0.02
COL4A4P53420 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL4A4P53420 RHOQP2-201ENST00000449922 579 ntBASIC14.95□□□□□ -0.02
COL4A4P53420 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC14.95□□□□□ -0.02
COL4A4P53420 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL4A4P53420 USP32P3-202ENST00000583574 611 ntTSL 3 BASIC14.95□□□□□ -0.02
COL4A4P53420 AP000356.3-203ENST00000614808 601 ntTSL 3 BASIC14.95□□□□□ -0.02
COL4A4P53420 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC14.95□□□□□ -0.02
COL4A4P53420 AC245369.7-201ENST00000631386 350 ntBASIC14.95□□□□□ -0.02
COL4A4P53420 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL4A4P53420 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC14.95□□□□□ -0.02
COL4A4P53420 HTR3D-201ENST00000334128 1459 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL4A4P53420 GOLGA8UP-201ENST00000527159 1755 ntBASIC14.95□□□□□ -0.02
COL4A4P53420 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL4A4P53420 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL4A4P53420 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC14.95□□□□□ -0.02
COL4A4P53420 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL4A4P53420 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL4A4P53420 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL4A4P53420 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC14.94□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 58.7 ms