Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 CTBP2P4-201ENST00000513884 920 ntBASIC14.8□□□□□ -0.04
HMGA1P17096 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC14.8□□□□□ -0.04
HMGA1P17096 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC14.8□□□□□ -0.04
HMGA1P17096 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC14.8□□□□□ -0.04
HMGA1P17096 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC14.8□□□□□ -0.04
HMGA1P17096 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
HMGA1P17096 AC140113.1-201ENST00000603467 169 ntBASIC14.8□□□□□ -0.04
HMGA1P17096 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HMGA1P17096 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HMGA1P17096 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HMGA1P17096 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HMGA1P17096 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HMGA1P17096 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HMGA1P17096 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HMGA1P17096 KRT8P43-201ENST00000406052 1458 ntBASIC14.8□□□□□ -0.04
HMGA1P17096 AC020910.6-201ENST00000623084 1459 ntBASIC14.8□□□□□ -0.04
HMGA1P17096 LINC02228-204ENST00000642115 2962 ntBASIC14.8□□□□□ -0.04
HMGA1P17096 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
HMGA1P17096 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC14.8□□□□□ -0.04
HMGA1P17096 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
HMGA1P17096 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC14.8□□□□□ -0.04
HMGA1P17096 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HMGA1P17096 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
HMGA1P17096 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC14.8□□□□□ -0.04
HMGA1P17096 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
HMGA1P17096 SARS-202ENST00000369923 1882 ntTSL 5 BASIC14.8□□□□□ -0.04
HMGA1P17096 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HMGA1P17096 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
HMGA1P17096 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
HMGA1P17096 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGA1P17096 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC14.79□□□□□ -0.04
HMGA1P17096 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGA1P17096 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGA1P17096 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
HMGA1P17096 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGA1P17096 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGA1P17096 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HMGA1P17096 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HMGA1P17096 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGA1P17096 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
HMGA1P17096 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGA1P17096 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGA1P17096 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC14.79□□□□□ -0.04
HMGA1P17096 HMGA1P1-201ENST00000415560 1062 ntBASIC14.79□□□□□ -0.04
HMGA1P17096 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGA1P17096 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC14.79□□□□□ -0.04
HMGA1P17096 RN7SL564P-201ENST00000496309 250 ntBASIC14.79□□□□□ -0.04
HMGA1P17096 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC14.79□□□□□ -0.04
HMGA1P17096 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC14.79□□□□□ -0.04
HMGA1P17096 TUBB8P4-201ENST00000511806 1324 ntBASIC14.79□□□□□ -0.04
HMGA1P17096 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HMGA1P17096 AP003398.1-201ENST00000531124 318 ntBASIC14.79□□□□□ -0.04
HMGA1P17096 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC14.79□□□□□ -0.04
HMGA1P17096 AC145285.5-201ENST00000562217 361 ntBASIC14.79□□□□□ -0.04
HMGA1P17096 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGA1P17096 DBP-202ENST00000593500 712 ntTSL 2 BASIC14.79□□□□□ -0.04
HMGA1P17096 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC14.79□□□□□ -0.04
HMGA1P17096 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
HMGA1P17096 TP53-221ENST00000615910 1149 ntTSL 5 BASIC14.79□□□□□ -0.04
HMGA1P17096 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC14.79□□□□□ -0.04
HMGA1P17096 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGA1P17096 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC14.79□□□□□ -0.04
HMGA1P17096 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGA1P17096 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HMGA1P17096 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC14.78□□□□□ -0.04
HMGA1P17096 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGA1P17096 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC14.78□□□□□ -0.04
HMGA1P17096 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
HMGA1P17096 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HMGA1P17096 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGA1P17096 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC14.78□□□□□ -0.04
HMGA1P17096 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HMGA1P17096 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC14.78□□□□□ -0.04
HMGA1P17096 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGA1P17096 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGA1P17096 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
HMGA1P17096 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HMGA1P17096 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
HMGA1P17096 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HMGA1P17096 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HMGA1P17096 DUT-208ENST00000559540 1441 ntTSL 2 BASIC14.78□□□□□ -0.04
HMGA1P17096 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGA1P17096 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC14.78□□□□□ -0.04
HMGA1P17096 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC14.78□□□□□ -0.04
HMGA1P17096 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGA1P17096 TSPY26P-202ENST00000565928 3884 ntBASIC14.78□□□□□ -0.04
HMGA1P17096 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGA1P17096 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGA1P17096 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGA1P17096 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HMGA1P17096 AL357563.1-201ENST00000404728 395 ntBASIC14.78□□□□□ -0.04
HMGA1P17096 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC14.78□□□□□ -0.04
HMGA1P17096 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC14.78□□□□□ -0.04
HMGA1P17096 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC14.78□□□□□ -0.04
HMGA1P17096 RN7SL357P-201ENST00000581065 298 ntBASIC14.78□□□□□ -0.04
HMGA1P17096 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC14.78□□□□□ -0.04
HMGA1P17096 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC14.78□□□□□ -0.04
HMGA1P17096 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC14.78□□□□□ -0.04
HMGA1P17096 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC14.78□□□□□ -0.04
HMGA1P17096 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 67.4 ms