Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF40O75150 AL359643.2-201ENST00000606227 3273 ntTSL 2 BASIC15.76■□□□□ 0.11
RNF40O75150 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC15.76■□□□□ 0.11
RNF40O75150 SPPL2B-209ENST00000613503 3456 ntAPPRIS P4 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF40O75150 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF40O75150 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC15.76■□□□□ 0.11
RNF40O75150 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC15.76■□□□□ 0.11
RNF40O75150 ZBED6CL-201ENST00000343855 2933 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
RNF40O75150 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF40O75150 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF40O75150 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
RNF40O75150 AL138709.1-201ENST00000614840 1693 ntBASIC15.76■□□□□ 0.11
RNF40O75150 LDLRAD2-201ENST00000344642 4012 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
RNF40O75150 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC15.76■□□□□ 0.11
RNF40O75150 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF40O75150 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF40O75150 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF40O75150 ANKRD20A19P-202ENST00000442969 2796 ntTSL 2 BASIC15.75■□□□□ 0.11
RNF40O75150 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
RNF40O75150 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF40O75150 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC15.75■□□□□ 0.11
RNF40O75150 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
RNF40O75150 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF40O75150 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC15.75■□□□□ 0.11
RNF40O75150 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC15.75■□□□□ 0.11
RNF40O75150 USH1C-201ENST00000005226 2700 ntAPPRIS P3 TSL 5 BASIC15.75■□□□□ 0.11
RNF40O75150 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
RNF40O75150 ABR-205ENST00000544583 5595 ntTSL 2 BASIC15.75■□□□□ 0.11
RNF40O75150 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF40O75150 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF40O75150 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF40O75150 AC020658.7-201ENST00000624274 2442 ntBASIC15.75■□□□□ 0.11
RNF40O75150 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF40O75150 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC15.75■□□□□ 0.11
RNF40O75150 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC15.75■□□□□ 0.11
RNF40O75150 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC15.75■□□□□ 0.11
RNF40O75150 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC15.75■□□□□ 0.11
RNF40O75150 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC15.75■□□□□ 0.11
RNF40O75150 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF40O75150 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF40O75150 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF40O75150 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF40O75150 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF40O75150 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
RNF40O75150 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
RNF40O75150 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC15.75■□□□□ 0.11
RNF40O75150 AC007969.1-201ENST00000433675 447 ntBASIC15.75■□□□□ 0.11
RNF40O75150 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC15.75■□□□□ 0.11
RNF40O75150 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC15.75■□□□□ 0.11
RNF40O75150 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC15.75■□□□□ 0.11
RNF40O75150 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC15.75■□□□□ 0.11
RNF40O75150 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC15.75■□□□□ 0.11
RNF40O75150 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC15.75■□□□□ 0.11
RNF40O75150 BX539320.1-201ENST00000623759 877 ntBASIC15.75■□□□□ 0.11
RNF40O75150 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
RNF40O75150 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
RNF40O75150 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF40O75150 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
RNF40O75150 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
RNF40O75150 DPP8-202ENST00000321147 3125 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
RNF40O75150 LINC01792-201ENST00000452787 2050 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
RNF40O75150 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
RNF40O75150 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF40O75150 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF40O75150 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF40O75150 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF40O75150 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC15.75■□□□□ 0.11
RNF40O75150 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC15.75■□□□□ 0.11
RNF40O75150 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
RNF40O75150 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC15.74■□□□□ 0.11
RNF40O75150 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RNF40O75150 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RNF40O75150 SCNN1A-215ENST00000540037 3040 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
RNF40O75150 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RNF40O75150 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RNF40O75150 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC15.74■□□□□ 0.11
RNF40O75150 RBBP8NL-201ENST00000252998 2793 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
RNF40O75150 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
RNF40O75150 SLC22A2-202ENST00000366953 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RNF40O75150 POMT1-201ENST00000341012 2912 ntTSL 2 BASIC15.74■□□□□ 0.11
RNF40O75150 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
RNF40O75150 RPS3-201ENST00000278572 907 ntTSL 3 BASIC15.74■□□□□ 0.11
RNF40O75150 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
RNF40O75150 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC15.74■□□□□ 0.11
RNF40O75150 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
RNF40O75150 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
RNF40O75150 MIR1202-201ENST00000408529 83 ntBASIC15.74■□□□□ 0.11
RNF40O75150 BTBD6P1-201ENST00000412176 1267 ntBASIC15.74■□□□□ 0.11
RNF40O75150 AL109935.1-201ENST00000413249 473 ntTSL 3 BASIC15.74■□□□□ 0.11
RNF40O75150 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC15.74■□□□□ 0.11
RNF40O75150 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
RNF40O75150 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC15.74■□□□□ 0.11
RNF40O75150 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
RNF40O75150 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RNF40O75150 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC15.74■□□□□ 0.11
RNF40O75150 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RNF40O75150 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC15.74■□□□□ 0.11
RNF40O75150 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC15.74■□□□□ 0.11
RNF40O75150 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
RNF40O75150 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms