Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 AC011498.7-201ENST00000624986 2027 ntBASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 CHMP1AP1-201ENST00000445563 662 ntBASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 KLF2P4-201ENST00000451959 1225 ntBASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 AC118465.1-201ENST00000513820 1271 ntBASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 AP003041.2-201ENST00000525666 1180 ntBASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 AP001981.1-201ENST00000531132 738 ntBASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 AP001020.1-201ENST00000579595 464 ntTSL 3 BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 AL162274.1-201ENST00000617191 1098 ntBASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 AL355860.1-201ENST00000636087 1229 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 POLL-206ENST00000370172 2308 ntTSL 2 BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 LINC01230-201ENST00000625222 3017 ntBASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC14.55□□□□□ -0.08
VPS9D1Q9Y2B5 BEND3P1-201ENST00000421591 1944 ntBASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 MPV17-206ENST00000402722 827 ntTSL 3 BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 HNRNPA1P27-201ENST00000412087 955 ntBASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 USB1-202ENST00000423271 1217 ntTSL 2 BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 GAS5-209ENST00000430245 723 ntTSL 3 BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 AC093581.1-204ENST00000442606 390 ntTSL 3 BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 CNN2P10-201ENST00000443067 918 ntBASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 GAPDHP21-201ENST00000450301 1010 ntBASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 PFN2-215ENST00000497148 743 ntTSL 4 BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 AP002807.1-203ENST00000534517 664 ntTSL 2 BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 AC012181.2-201ENST00000570210 699 ntBASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC14.54□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms