Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 PPA1-204ENST00000495346 282 ntTSL 34.66□□□□□ -1.664e-22■□□□□ 8.7
YBX3P16989 PITX1-206ENST00000507253 587 ntTSL 330.79■■■□□ 2.521e-6■□□□□ 8.7
YBX3P16989 ATP2A2-208ENST00000549840 503 ntTSL 59.91□□□□□ -0.825e-11■□□□□ 8.7
YBX3P16989 SRRM2-212ENST00000572952 1118 ntTSL 218.93■□□□□ 0.622e-24■□□□□ 8.7
YBX3P16989 SRRM2-208ENST00000571378 2870 ntTSL 1 (best)15.22■□□□□ 0.032e-24■□□□□ 8.7
YBX3P16989 STXBP2-215ENST00000599558 385 ntTSL 220.36■□□□□ 0.851e-16■□□□□ 8.7
YBX3P16989 ALB-203ENST00000415165 1483 ntTSL 1 (best) BASIC8.26□□□□□ -1.092e-73■□□□□ 8.7
YBX3P16989 ALB-208ENST00000495173 445 ntTSL 37.74□□□□□ -1.172e-73■□□□□ 8.7
YBX3P16989 ALB-220ENST00000621628 1606 ntTSL 5 BASIC7.55□□□□□ -1.22e-73■□□□□ 8.7
YBX3P16989 ALB-209ENST00000503124 1741 ntTSL 5 BASIC7.49□□□□□ -1.212e-73■□□□□ 8.7
YBX3P16989 ALB-219ENST00000621085 1418 ntTSL 5 BASIC7□□□□□ -1.292e-73■□□□□ 8.7
YBX3P16989 ALB-214ENST00000509063 1911 ntTSL 5 BASIC6.44□□□□□ -1.382e-73■□□□□ 8.7
YBX3P16989 ALB-211ENST00000505649 1509 ntTSL 56.4□□□□□ -1.382e-73■□□□□ 8.7
YBX3P16989 ALB-213ENST00000508932 369 ntTSL 36.33□□□□□ -1.42e-73■□□□□ 8.7
YBX3P16989 ALB-205ENST00000476441 1604 ntTSL 56.18□□□□□ -1.422e-73■□□□□ 8.7
YBX3P16989 ALB-216ENST00000511370 1519 ntTSL 56.15□□□□□ -1.422e-73■□□□□ 8.7
YBX3P16989 ALB-202ENST00000401494 1659 ntTSL 5 BASIC5.72□□□□□ -1.492e-73■□□□□ 8.7
YBX3P16989 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.552e-73■□□□□ 8.7
YBX3P16989 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.273e-7■□□□□ 8.6
YBX3P16989 TMEM209-206ENST00000473456 1961 ntTSL 1 (best) BASIC8.4□□□□□ -1.063e-7■□□□□ 8.6
YBX3P16989 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC7.33□□□□□ -1.243e-7■□□□□ 8.6
YBX3P16989 LMNB2-205ENST00000532465 769 ntTSL 324.85■■□□□ 1.572e-8■□□□□ 8.6
YBX3P16989 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC22.87■■□□□ 1.252e-8■□□□□ 8.6
YBX3P16989 LMNB2-202ENST00000475819 885 ntTSL 522.73■■□□□ 1.232e-8■□□□□ 8.6
YBX3P16989 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC22.02■■□□□ 1.122e-8■□□□□ 8.6
YBX3P16989 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC21.28■■□□□ 12e-8■□□□□ 8.6
YBX3P16989 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC20.73■□□□□ 0.912e-8■□□□□ 8.6
YBX3P16989 KIF22-205ENST00000563666 1603 ntTSL 520.63■□□□□ 0.892e-8■□□□□ 8.6
YBX3P16989 NSMF-202ENST00000371468 672 ntTSL 220.08■□□□□ 0.812e-8■□□□□ 8.6
YBX3P16989 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.48■□□□□ 0.712e-8■□□□□ 8.6
YBX3P16989 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.672e-8■□□□□ 8.6
YBX3P16989 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.652e-8■□□□□ 8.6
YBX3P16989 FTSJ1-213ENST00000496365 1287 ntTSL 518.65■□□□□ 0.582e-8■□□□□ 8.6
YBX3P16989 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC18.19■□□□□ 0.52e-8■□□□□ 8.6
YBX3P16989 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC18.11■□□□□ 0.492e-8■□□□□ 8.6
YBX3P16989 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.472e-8■□□□□ 8.6
YBX3P16989 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC17.85■□□□□ 0.452e-8■□□□□ 8.6
YBX3P16989 FTSJ1-210ENST00000489599 778 ntTSL 316.99■□□□□ 0.312e-8■□□□□ 8.6
YBX3P16989 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.282e-8■□□□□ 8.6
YBX3P16989 PRR13-202ENST00000429243 1229 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.122e-8■□□□□ 8.6
YBX3P16989 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC14.27□□□□□ -0.131e-323■□□□□ 8.6
YBX3P16989 PRR13-201ENST00000379786 927 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.232e-8■□□□□ 8.6
YBX3P16989 KIF22-204ENST00000563263 600 ntTSL 313.07□□□□□ -0.322e-8■□□□□ 8.6
YBX3P16989 KIF22-202ENST00000400751 2493 ntTSL 2 BASIC12.94□□□□□ -0.342e-8■□□□□ 8.6
YBX3P16989 FTSJ1-205ENST00000467954 803 ntTSL 312.07□□□□□ -0.482e-8■□□□□ 8.6
YBX3P16989 SEPT8-210ENST00000448933 4270 ntTSL 1 (best) BASIC11.88□□□□□ -0.512e-8■□□□□ 8.6
YBX3P16989 SEPT8-202ENST00000371478 737 ntTSL 311.77□□□□□ -0.532e-8■□□□□ 8.6
YBX3P16989 PRR13-210ENST00000551003 1009 ntAPPRIS ALT2 TSL 3 BASIC11.48□□□□□ -0.572e-8■□□□□ 8.6
YBX3P16989 PRR13-203ENST00000546581 810 ntAPPRIS ALT2 TSL 3 BASIC11.17□□□□□ -0.622e-8■□□□□ 8.6
YBX3P16989 PRR13-206ENST00000549135 755 ntAPPRIS ALT2 TSL 3 BASIC11.17□□□□□ -0.622e-8■□□□□ 8.6
YBX3P16989 PRR13-207ENST00000549581 838 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.622e-8■□□□□ 8.6
YBX3P16989 SRP68-208ENST00000588736 2532 ntTSL 210.74□□□□□ -0.692e-8■□□□□ 8.6
YBX3P16989 PRR13-205ENST00000549068 755 ntAPPRIS ALT2 TSL 5 BASIC10.02□□□□□ -0.812e-8■□□□□ 8.6
YBX3P16989 PHKB-209ENST00000566275 1375 ntTSL 39.99□□□□□ -0.812e-8■□□□□ 8.6
YBX3P16989 PRR13-204ENST00000547368 688 ntAPPRIS ALT2 TSL 3 BASIC9.07□□□□□ -0.962e-8■□□□□ 8.6
YBX3P16989 KDM3B-205ENST00000508386 540 ntTSL 48.45□□□□□ -1.062e-8■□□□□ 8.6
YBX3P16989 SNX2-208ENST00000509281 579 ntTSL 38.44□□□□□ -1.062e-8■□□□□ 8.6
YBX3P16989 B2M-211ENST00000561139 717 ntTSL 38.23□□□□□ -1.091e-23■□□□□ 8.6
YBX3P16989 PHKB-215ENST00000568171 1113 ntTSL 37.86□□□□□ -1.152e-8■□□□□ 8.6
YBX3P16989 KDM3B-204ENST00000507996 3034 ntTSL 26.63□□□□□ -1.352e-8■□□□□ 8.6
YBX3P16989 LMAN2-204ENST00000504071 562 ntTSL 223.27■■□□□ 1.324e-8■□□□□ 8.6
YBX3P16989 HMGN2-208ENST00000479815 1030 ntTSL 510.34□□□□□ -0.755e-7■□□□□ 8.6
YBX3P16989 HMGN2-207ENST00000468388 320 ntTSL 39.06□□□□□ -0.965e-7■□□□□ 8.6
YBX3P16989 DUS1L-204ENST00000542088 1040 ntTSL 325.16■■□□□ 1.624e-9■□□□□ 8.6
YBX3P16989 DUS1L-203ENST00000538833 1250 ntTSL 1 (best)23.16■■□□□ 1.34e-9■□□□□ 8.6
YBX3P16989 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.974e-9■□□□□ 8.6
YBX3P16989 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.814e-9■□□□□ 8.6
YBX3P16989 DUS1L-205ENST00000577574 473 ntTSL 519.6■□□□□ 0.734e-9■□□□□ 8.6
YBX3P16989 DUS1L-212ENST00000579854 657 ntTSL 218.64■□□□□ 0.574e-9■□□□□ 8.6
YBX3P16989 DUS1L-216ENST00000584871 676 ntTSL 216.54■□□□□ 0.244e-9■□□□□ 8.6
YBX3P16989 DUS1L-210ENST00000578846 4456 ntTSL 214.54□□□□□ -0.084e-9■□□□□ 8.6
YBX3P16989 AHSG-202ENST00000411641 1711 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.363e-60■□□□□ 8.6
YBX3P16989 AHSG-201ENST00000273784 1553 ntAPPRIS ALT2 TSL 3 BASIC11.47□□□□□ -0.573e-60■□□□□ 8.6
YBX3P16989 RPS9-210ENST00000460761 644 ntTSL 219.04■□□□□ 0.647e-51■□□□□ 8.6
YBX3P16989 RPS9-211ENST00000484121 897 ntTSL 218.35■□□□□ 0.537e-51■□□□□ 8.6
YBX3P16989 RPS9-213ENST00000626547 476 ntTSL 2 BASIC16.39■□□□□ 0.217e-51■□□□□ 8.6
YBX3P16989 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC29.28■■■□□ 2.282e-8■□□□□ 8.6
YBX3P16989 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC29.21■■■□□ 2.272e-8■□□□□ 8.6
YBX3P16989 SPI1-203ENST00000533030 661 ntTSL 2 BASIC27.86■■■□□ 2.052e-8■□□□□ 8.6
YBX3P16989 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC26.72■■□□□ 1.872e-8■□□□□ 8.6
YBX3P16989 IP6K2-227ENST00000479914 1077 ntTSL 1 (best)21.91■■□□□ 1.12e-8■□□□□ 8.6
YBX3P16989 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC21.76■■□□□ 1.072e-8■□□□□ 8.6
YBX3P16989 THUMPD1-203ENST00000565248 1099 ntTSL 321.32■■□□□ 12e-8■□□□□ 8.6
YBX3P16989 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.562e-8■□□□□ 8.6
YBX3P16989 CHEK2-216ENST00000439200 906 ntTSL 518.54■□□□□ 0.562e-8■□□□□ 8.6
YBX3P16989 CHEK2-213ENST00000433028 1349 ntTSL 518.13■□□□□ 0.492e-8■□□□□ 8.6
YBX3P16989 THUMPD1-204ENST00000569768 635 ntTSL 217.66■□□□□ 0.422e-8■□□□□ 8.6
YBX3P16989 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.372e-8■□□□□ 8.6
YBX3P16989 CHEK2-203ENST00000382565 696 ntTSL 5 BASIC16.97■□□□□ 0.312e-8■□□□□ 8.6
YBX3P16989 GUSB-214ENST00000489482 519 ntTSL 216.48■□□□□ 0.232e-8■□□□□ 8.6
YBX3P16989 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.182e-8■□□□□ 8.6
YBX3P16989 IP6K2-201ENST00000328631 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.12e-8■□□□□ 8.6
YBX3P16989 YIPF3-209ENST00000500090 406 ntTSL 315.65■□□□□ 0.14e-8■□□□□ 8.6
YBX3P16989 TLN1-202ENST00000378192 1693 ntTSL 215.54■□□□□ 0.082e-8■□□□□ 8.6
YBX3P16989 THUMPD1-206ENST00000636554 2567 ntTSL 515.12■□□□□ 0.012e-8■□□□□ 8.6
YBX3P16989 CHEK2-210ENST00000416671 2560 ntTSL 1 (best)14.8□□□□□ -0.042e-8■□□□□ 8.6
YBX3P16989 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.082e-8■□□□□ 8.6
YBX3P16989 MAP2K1-203ENST00000566326 1432 ntTSL 5 BASIC13.77□□□□□ -0.212e-8■□□□□ 8.6
YBX3P16989 CHEK2-207ENST00000403642 1359 ntTSL 1 (best) BASIC13.33□□□□□ -0.272e-8■□□□□ 8.6
YBX3P16989 ELOVL6-201ENST00000302274 3090 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.292e-8■□□□□ 8.6
Retrieved 100 of 29,075 protein–RNA pairs in 379.7 ms