Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
TNFP01375 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC14.08□□□□□ -0.16
TNFP01375 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
TNFP01375 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC14.08□□□□□ -0.16
TNFP01375 BRD7P5-201ENST00000299197 1822 ntBASIC14.08□□□□□ -0.16
TNFP01375 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC14.08□□□□□ -0.16
TNFP01375 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC14.08□□□□□ -0.16
TNFP01375 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
TNFP01375 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC14.08□□□□□ -0.16
TNFP01375 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
TNFP01375 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC14.08□□□□□ -0.16
TNFP01375 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
TNFP01375 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
TNFP01375 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC14.08□□□□□ -0.16
TNFP01375 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC14.08□□□□□ -0.16
TNFP01375 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
TNFP01375 AC113367.3-201ENST00000508316 1912 ntBASIC14.07□□□□□ -0.16
TNFP01375 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TNFP01375 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TNFP01375 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
TNFP01375 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TNFP01375 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
TNFP01375 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
TNFP01375 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC14.07□□□□□ -0.16
TNFP01375 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
TNFP01375 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC14.07□□□□□ -0.16
TNFP01375 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC14.07□□□□□ -0.16
TNFP01375 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TNFP01375 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TNFP01375 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TNFP01375 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
TNFP01375 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC14.07□□□□□ -0.16
TNFP01375 AC078991.1-201ENST00000437297 610 ntBASIC14.07□□□□□ -0.16
TNFP01375 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC14.07□□□□□ -0.16
TNFP01375 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC14.07□□□□□ -0.16
TNFP01375 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
TNFP01375 AC008267.1-201ENST00000474858 1069 ntBASIC14.07□□□□□ -0.16
TNFP01375 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
TNFP01375 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
TNFP01375 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC14.07□□□□□ -0.16
TNFP01375 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC14.07□□□□□ -0.16
TNFP01375 AC087392.5-201ENST00000612517 489 ntBASIC14.07□□□□□ -0.16
TNFP01375 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC14.07□□□□□ -0.16
TNFP01375 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TNFP01375 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC14.07□□□□□ -0.16
TNFP01375 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
TNFP01375 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC14.07□□□□□ -0.16
TNFP01375 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TNFP01375 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
TNFP01375 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
TNFP01375 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
TNFP01375 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
TNFP01375 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC14.07□□□□□ -0.16
TNFP01375 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
TNFP01375 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
TNFP01375 CCT8L1P-201ENST00000465400 1674 ntBASIC14.07□□□□□ -0.16
TNFP01375 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TNFP01375 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC14.07□□□□□ -0.16
TNFP01375 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC14.07□□□□□ -0.16
TNFP01375 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TNFP01375 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TNFP01375 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
TNFP01375 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
TNFP01375 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
TNFP01375 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TNFP01375 DBET-201ENST00000630918 3363 ntBASIC14.06□□□□□ -0.16
TNFP01375 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TNFP01375 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TNFP01375 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC14.06□□□□□ -0.16
TNFP01375 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC14.06□□□□□ -0.16
TNFP01375 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC14.06□□□□□ -0.16
TNFP01375 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC14.06□□□□□ -0.16
TNFP01375 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC14.06□□□□□ -0.16
TNFP01375 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TNFP01375 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TNFP01375 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TNFP01375 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC14.06□□□□□ -0.16
TNFP01375 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TNFP01375 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
TNFP01375 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TNFP01375 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC14.06□□□□□ -0.16
TNFP01375 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TNFP01375 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC14.06□□□□□ -0.16
TNFP01375 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC14.06□□□□□ -0.16
TNFP01375 DNAJB1P1-201ENST00000429417 1024 ntBASIC14.06□□□□□ -0.16
TNFP01375 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC14.06□□□□□ -0.16
TNFP01375 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC14.06□□□□□ -0.16
TNFP01375 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC14.06□□□□□ -0.16
TNFP01375 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC14.06□□□□□ -0.16
TNFP01375 RN7SL181P-201ENST00000462921 277 ntBASIC14.06□□□□□ -0.16
TNFP01375 AC130709.1-201ENST00000484779 1212 ntBASIC14.06□□□□□ -0.16
TNFP01375 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC14.06□□□□□ -0.16
TNFP01375 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC14.06□□□□□ -0.16
TNFP01375 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC14.06□□□□□ -0.16
TNFP01375 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
TNFP01375 AP002803.1-201ENST00000528836 498 ntBASIC14.06□□□□□ -0.16
TNFP01375 FOS-204ENST00000554617 796 ntTSL 2 BASIC14.06□□□□□ -0.16
TNFP01375 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
TNFP01375 MIR4522-201ENST00000584932 87 ntBASIC14.06□□□□□ -0.16
TNFP01375 AC092171.5-201ENST00000608012 942 ntBASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms