Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LHX1P48742 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
LHX1P48742 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC15.27■□□□□ 0.04
LHX1P48742 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC15.27■□□□□ 0.04
LHX1P48742 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LHX1P48742 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC15.27■□□□□ 0.04
LHX1P48742 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LHX1P48742 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
LHX1P48742 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.04
LHX1P48742 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LHX1P48742 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
LHX1P48742 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LHX1P48742 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LHX1P48742 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LHX1P48742 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC15.27■□□□□ 0.04
LHX1P48742 RPS9P1-201ENST00000419943 583 ntBASIC15.27■□□□□ 0.04
LHX1P48742 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC15.27■□□□□ 0.04
LHX1P48742 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC15.27■□□□□ 0.04
LHX1P48742 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC15.27■□□□□ 0.04
LHX1P48742 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC15.27■□□□□ 0.04
LHX1P48742 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
LHX1P48742 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LHX1P48742 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC15.27■□□□□ 0.04
LHX1P48742 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC15.27■□□□□ 0.04
LHX1P48742 MIR3907-201ENST00000579424 151 ntBASIC15.27■□□□□ 0.04
LHX1P48742 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.04
LHX1P48742 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LHX1P48742 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
LHX1P48742 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
LHX1P48742 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LHX1P48742 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC15.27■□□□□ 0.03
LHX1P48742 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
LHX1P48742 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
LHX1P48742 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.03
LHX1P48742 BX640514.1-201ENST00000583223 1918 ntBASIC15.27■□□□□ 0.03
LHX1P48742 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
LHX1P48742 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
LHX1P48742 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LHX1P48742 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
LHX1P48742 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC15.26■□□□□ 0.03
LHX1P48742 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
LHX1P48742 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LHX1P48742 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LHX1P48742 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
LHX1P48742 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LHX1P48742 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LHX1P48742 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
LHX1P48742 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
LHX1P48742 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
LHX1P48742 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
LHX1P48742 AL596257.1-201ENST00000641463 2694 ntBASIC15.26■□□□□ 0.03
LHX1P48742 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LHX1P48742 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LHX1P48742 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LHX1P48742 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC15.26■□□□□ 0.03
LHX1P48742 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LHX1P48742 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC15.26■□□□□ 0.03
LHX1P48742 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LHX1P48742 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC15.26■□□□□ 0.03
LHX1P48742 MAGEA5-201ENST00000446757 942 ntBASIC15.26■□□□□ 0.03
LHX1P48742 RN7SL67P-201ENST00000492147 296 ntBASIC15.26■□□□□ 0.03
LHX1P48742 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC15.26■□□□□ 0.03
LHX1P48742 AC114947.1-202ENST00000514136 344 ntBASIC15.26■□□□□ 0.03
LHX1P48742 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
LHX1P48742 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
LHX1P48742 AL512310.5-201ENST00000551999 515 ntBASIC15.26■□□□□ 0.03
LHX1P48742 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC15.26■□□□□ 0.03
LHX1P48742 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC15.26■□□□□ 0.03
LHX1P48742 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC15.26■□□□□ 0.03
LHX1P48742 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC15.26■□□□□ 0.03
LHX1P48742 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC15.26■□□□□ 0.03
LHX1P48742 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
LHX1P48742 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LHX1P48742 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LHX1P48742 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LHX1P48742 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
LHX1P48742 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
LHX1P48742 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LHX1P48742 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
LHX1P48742 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LHX1P48742 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LHX1P48742 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LHX1P48742 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
LHX1P48742 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LHX1P48742 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
LHX1P48742 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LHX1P48742 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
LHX1P48742 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC15.26■□□□□ 0.03
LHX1P48742 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
LHX1P48742 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC15.26■□□□□ 0.03
LHX1P48742 KRT8P31-201ENST00000504812 1408 ntBASIC15.26■□□□□ 0.03
LHX1P48742 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC15.26■□□□□ 0.03
LHX1P48742 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
LHX1P48742 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LHX1P48742 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
LHX1P48742 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LHX1P48742 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LHX1P48742 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LHX1P48742 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
LHX1P48742 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 66.8 ms