Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 CLK3P2-201ENST00000427566 1453 ntBASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 FBN3-207ENST00000601739 9086 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 AC012617.1-204ENST00000586340 2305 ntBASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 THBS2-201ENST00000366787 5811 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 STRCP1-201ENST00000509801 5328 ntBASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 FUT8-203ENST00000360689 5166 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 ANKMY1-206ENST00000401804 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 SF3A1-201ENST00000215793 5143 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 MYL10-201ENST00000223167 1009 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 COX5BP8-201ENST00000416911 349 ntBASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 AC007688.1-201ENST00000475592 759 ntBASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 CETP-203ENST00000566128 1733 ntTSL 5 BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 PRDM15-207ENST00000447207 4928 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 DDX27-201ENST00000371764 2643 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 LCOR-203ENST00000371097 4852 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 RBSN-207ENST00000476527 3005 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
DEPDC4Q8N2C3 WASHC2A-209ENST00000611324 4417 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 NALCN-AS1-201ENST00000457843 2846 ntTSL 2 BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 TNS2-203ENST00000379902 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 ANKZF1-201ENST00000323348 2579 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 TP73-211ENST00000604074 4806 ntTSL 5 BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 NSL1-201ENST00000366976 722 ntTSL 2 BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 KSR1-204ENST00000398988 7237 ntAPPRIS P2 TSL 5 BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 AC007041.1-201ENST00000438989 1155 ntBASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 TMEM261P1-201ENST00000604899 340 ntBASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 GIPR-205ENST00000590918 3289 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 NAA15-201ENST00000296543 6222 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 RIMBP2-201ENST00000261655 6321 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms