Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CXCL1P09341 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC11.29□□□□□ -0.6
CXCL1P09341 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC11.29□□□□□ -0.6
CXCL1P09341 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
CXCL1P09341 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
CXCL1P09341 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC11.29□□□□□ -0.6
CXCL1P09341 FAM58CP-201ENST00000435741 640 ntBASIC11.29□□□□□ -0.6
CXCL1P09341 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC11.29□□□□□ -0.6
CXCL1P09341 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC11.29□□□□□ -0.6
CXCL1P09341 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
CXCL1P09341 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
CXCL1P09341 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC11.29□□□□□ -0.6
CXCL1P09341 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC11.29□□□□□ -0.6
CXCL1P09341 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
CXCL1P09341 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC11.29□□□□□ -0.6
CXCL1P09341 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC11.29□□□□□ -0.6
CXCL1P09341 S1PR1-201ENST00000305352 2909 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CXCL1P09341 PLOD2-209ENST00000494950 2908 ntTSL 2 BASIC11.29□□□□□ -0.6
CXCL1P09341 SPOCK3-207ENST00000504953 2900 ntAPPRIS P3 TSL 5 BASIC11.29□□□□□ -0.6
CXCL1P09341 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC11.29□□□□□ -0.6
CXCL1P09341 CHGB-201ENST00000378961 2550 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CXCL1P09341 MNT-201ENST00000174618 4996 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CXCL1P09341 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CXCL1P09341 ZNF124-202ENST00000472531 2243 ntTSL 2 BASIC11.29□□□□□ -0.6
CXCL1P09341 LINC00865-202ENST00000448963 4272 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
CXCL1P09341 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC11.29□□□□□ -0.6
CXCL1P09341 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
CXCL1P09341 ABL2-207ENST00000507173 3177 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
CXCL1P09341 IP6K3-201ENST00000293756 2610 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CXCL1P09341 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CXCL1P09341 TMPRSS4-213ENST00000522824 2052 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
CXCL1P09341 SGTB-201ENST00000381007 5469 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CXCL1P09341 TBX3-202ENST00000349155 4723 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CXCL1P09341 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CXCL1P09341 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC11.29□□□□□ -0.6
CXCL1P09341 STXBP6-202ENST00000396700 4021 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CXCL1P09341 HPD-204ENST00000543163 1709 ntTSL 5 BASIC11.29□□□□□ -0.6
CXCL1P09341 CHTF18-201ENST00000262315 3090 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
CXCL1P09341 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CXCL1P09341 AEBP1-201ENST00000223357 4081 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CXCL1P09341 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CXCL1P09341 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CXCL1P09341 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
CXCL1P09341 SCAF4-202ENST00000399804 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
CXCL1P09341 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC11.28□□□□□ -0.6
CXCL1P09341 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC11.28□□□□□ -0.6
CXCL1P09341 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
CXCL1P09341 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
CXCL1P09341 ZNF185-205ENST00000370270 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
CXCL1P09341 PLAT-203ENST00000429089 2599 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
CXCL1P09341 DNAH2-202ENST00000570791 2994 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
CXCL1P09341 APOBR-201ENST00000431282 3765 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
CXCL1P09341 C9orf170-201ENST00000623052 3239 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
CXCL1P09341 NRP1-202ENST00000374816 2804 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
CXCL1P09341 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
CXCL1P09341 ZMYM3-207ENST00000373998 6067 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
CXCL1P09341 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
CXCL1P09341 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
CXCL1P09341 TACC2-209ENST00000369004 3667 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
CXCL1P09341 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
CXCL1P09341 LAMB2-201ENST00000305544 5643 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
CXCL1P09341 TOP3B-202ENST00000398793 3107 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
CXCL1P09341 PLOD3-201ENST00000223127 2920 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
CXCL1P09341 ESRRB-201ENST00000380887 2745 ntTSL 5 BASIC11.28□□□□□ -0.6
CXCL1P09341 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
CXCL1P09341 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC11.28□□□□□ -0.6
CXCL1P09341 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
CXCL1P09341 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC11.28□□□□□ -0.6
CXCL1P09341 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC11.28□□□□□ -0.6
CXCL1P09341 TROVE2-206ENST00000400968 2143 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
CXCL1P09341 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC11.28□□□□□ -0.6
CXCL1P09341 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC11.28□□□□□ -0.6
CXCL1P09341 PFN2-205ENST00000461868 613 ntTSL 2 BASIC11.28□□□□□ -0.6
CXCL1P09341 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC11.28□□□□□ -0.6
CXCL1P09341 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC11.28□□□□□ -0.6
CXCL1P09341 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
CXCL1P09341 SLC25A39P2-201ENST00000537614 270 ntBASIC11.28□□□□□ -0.6
CXCL1P09341 AC104758.3-203ENST00000562938 2123 ntBASIC11.28□□□□□ -0.6
CXCL1P09341 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC11.28□□□□□ -0.6
CXCL1P09341 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC11.28□□□□□ -0.6
CXCL1P09341 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC11.28□□□□□ -0.6
CXCL1P09341 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
CXCL1P09341 AC025181.2-201ENST00000606994 802 ntBASIC11.28□□□□□ -0.6
CXCL1P09341 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC11.28□□□□□ -0.6
CXCL1P09341 CIPC-201ENST00000361786 4486 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
CXCL1P09341 ATG16L1-202ENST00000373525 2767 ntTSL 5 BASIC11.28□□□□□ -0.6
CXCL1P09341 SEC31A-208ENST00000448323 4255 ntAPPRIS P4 TSL 5 BASIC11.28□□□□□ -0.6
CXCL1P09341 ATP2C1-221ENST00000513801 3439 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
CXCL1P09341 SLC44A4-202ENST00000229729 2589 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
CXCL1P09341 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
CXCL1P09341 NUTM2A-AS1-208ENST00000446751 2394 ntTSL 2 BASIC11.28□□□□□ -0.6
CXCL1P09341 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
CXCL1P09341 BSCL2-206ENST00000405837 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
CXCL1P09341 APOBEC3D-202ENST00000427494 1961 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
CXCL1P09341 PARN-203ENST00000437198 3078 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
CXCL1P09341 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
CXCL1P09341 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC11.28□□□□□ -0.6
CXCL1P09341 RPA2-203ENST00000373912 1752 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
CXCL1P09341 FAM122B-203ENST00000370790 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
CXCL1P09341 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC11.28□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms