Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
SIX3O95343 IGHV3-72-202ENST00000621503 303 ntBASIC14.22□□□□□ -0.13
SIX3O95343 AC027601.3-201ENST00000622907 509 ntBASIC14.22□□□□□ -0.13
SIX3O95343 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC14.22□□□□□ -0.13
SIX3O95343 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
SIX3O95343 KRT8P4-201ENST00000509735 1454 ntBASIC14.22□□□□□ -0.13
SIX3O95343 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC14.22□□□□□ -0.13
SIX3O95343 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC14.22□□□□□ -0.13
SIX3O95343 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC14.22□□□□□ -0.13
SIX3O95343 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SIX3O95343 RET-205ENST00000615310 4337 ntTSL 5 BASIC14.22□□□□□ -0.13
SIX3O95343 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SIX3O95343 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC14.22□□□□□ -0.13
SIX3O95343 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SIX3O95343 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SIX3O95343 AC072061.1-201ENST00000569710 2234 ntBASIC14.22□□□□□ -0.13
SIX3O95343 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
SIX3O95343 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
SIX3O95343 CROT-203ENST00000419147 2959 ntTSL 2 BASIC14.22□□□□□ -0.13
SIX3O95343 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SIX3O95343 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
SIX3O95343 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
SIX3O95343 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SIX3O95343 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
SIX3O95343 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC14.22□□□□□ -0.13
SIX3O95343 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC14.22□□□□□ -0.13
SIX3O95343 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SIX3O95343 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SIX3O95343 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
SIX3O95343 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SIX3O95343 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SIX3O95343 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SIX3O95343 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SIX3O95343 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SIX3O95343 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC14.21□□□□□ -0.13
SIX3O95343 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
SIX3O95343 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC14.21□□□□□ -0.13
SIX3O95343 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SIX3O95343 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SIX3O95343 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC14.21□□□□□ -0.13
SIX3O95343 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC14.21□□□□□ -0.13
SIX3O95343 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC14.21□□□□□ -0.13
SIX3O95343 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC14.21□□□□□ -0.13
SIX3O95343 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
SIX3O95343 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
SIX3O95343 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.13
SIX3O95343 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SIX3O95343 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC14.21□□□□□ -0.13
SIX3O95343 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SIX3O95343 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SIX3O95343 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC14.21□□□□□ -0.13
SIX3O95343 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC14.21□□□□□ -0.13
SIX3O95343 PTPA-215ENST00000432124 567 ntTSL 4 BASIC14.21□□□□□ -0.13
SIX3O95343 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC14.21□□□□□ -0.13
SIX3O95343 AC007551.1-201ENST00000457394 519 ntBASIC14.21□□□□□ -0.13
SIX3O95343 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SIX3O95343 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC14.21□□□□□ -0.13
SIX3O95343 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC14.21□□□□□ -0.13
SIX3O95343 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC14.21□□□□□ -0.13
SIX3O95343 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
SIX3O95343 PUDP-206ENST00000540122 825 ntTSL 2 BASIC14.21□□□□□ -0.13
SIX3O95343 AL596325.1-201ENST00000563991 1082 ntBASIC14.21□□□□□ -0.13
SIX3O95343 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SIX3O95343 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SIX3O95343 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SIX3O95343 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC14.21□□□□□ -0.13
SIX3O95343 LARP4-220ENST00000615080 856 ntTSL 5 BASIC14.21□□□□□ -0.13
SIX3O95343 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
SIX3O95343 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SIX3O95343 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC14.21□□□□□ -0.13
SIX3O95343 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC14.21□□□□□ -0.13
SIX3O95343 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.13
SIX3O95343 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SIX3O95343 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC14.21□□□□□ -0.13
SIX3O95343 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC14.21□□□□□ -0.13
SIX3O95343 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC14.21□□□□□ -0.13
SIX3O95343 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
SIX3O95343 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC14.21□□□□□ -0.13
SIX3O95343 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SIX3O95343 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
SIX3O95343 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.14
SIX3O95343 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC14.21□□□□□ -0.14
SIX3O95343 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC14.21□□□□□ -0.14
SIX3O95343 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
SIX3O95343 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
SIX3O95343 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.14
SIX3O95343 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
SIX3O95343 AL365181.3-201ENST00000605886 3222 ntBASIC14.2□□□□□ -0.14
SIX3O95343 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SIX3O95343 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SIX3O95343 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC14.2□□□□□ -0.14
SIX3O95343 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC14.2□□□□□ -0.14
SIX3O95343 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
SIX3O95343 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC14.2□□□□□ -0.14
SIX3O95343 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SIX3O95343 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SIX3O95343 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC14.2□□□□□ -0.14
SIX3O95343 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC14.2□□□□□ -0.14
SIX3O95343 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
SIX3O95343 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms