Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC11.72□□□□□ -0.53
HOXA3O43365 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HOXA3O43365 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC11.72□□□□□ -0.53
HOXA3O43365 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
HOXA3O43365 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HOXA3O43365 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
HOXA3O43365 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC11.72□□□□□ -0.53
HOXA3O43365 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
HOXA3O43365 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC11.72□□□□□ -0.53
HOXA3O43365 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
HOXA3O43365 TET3-201ENST00000305799 5174 ntTSL 5 BASIC11.72□□□□□ -0.53
HOXA3O43365 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
HOXA3O43365 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HOXA3O43365 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
HOXA3O43365 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HOXA3O43365 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
HOXA3O43365 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HOXA3O43365 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC11.72□□□□□ -0.53
HOXA3O43365 CICP14-201ENST00000629111 2732 ntBASIC11.72□□□□□ -0.53
HOXA3O43365 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
HOXA3O43365 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HOXA3O43365 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
HOXA3O43365 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
HOXA3O43365 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
HOXA3O43365 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
HOXA3O43365 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
HOXA3O43365 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC11.71□□□□□ -0.53
HOXA3O43365 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC11.71□□□□□ -0.53
HOXA3O43365 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
HOXA3O43365 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
HOXA3O43365 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
HOXA3O43365 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC11.71□□□□□ -0.53
HOXA3O43365 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
HOXA3O43365 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC11.71□□□□□ -0.53
HOXA3O43365 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
HOXA3O43365 CAP2P1-201ENST00000557743 1390 ntBASIC11.71□□□□□ -0.53
HOXA3O43365 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC11.71□□□□□ -0.53
HOXA3O43365 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
HOXA3O43365 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
HOXA3O43365 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC11.71□□□□□ -0.53
HOXA3O43365 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
HOXA3O43365 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
HOXA3O43365 ACE3P-201ENST00000423435 1973 ntBASIC11.71□□□□□ -0.53
HOXA3O43365 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
HOXA3O43365 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
HOXA3O43365 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC11.71□□□□□ -0.53
HOXA3O43365 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
HOXA3O43365 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
HOXA3O43365 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
HOXA3O43365 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
HOXA3O43365 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
HOXA3O43365 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
HOXA3O43365 AC026316.1-201ENST00000398900 414 ntBASIC11.71□□□□□ -0.53
HOXA3O43365 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC11.71□□□□□ -0.53
HOXA3O43365 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
HOXA3O43365 AC026320.2-201ENST00000434379 478 ntBASIC11.71□□□□□ -0.53
HOXA3O43365 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC11.71□□□□□ -0.53
HOXA3O43365 LDHBP1-201ENST00000455730 1119 ntBASIC11.71□□□□□ -0.53
HOXA3O43365 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC11.71□□□□□ -0.53
HOXA3O43365 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC11.71□□□□□ -0.53
HOXA3O43365 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC11.71□□□□□ -0.53
HOXA3O43365 AC026803.1-201ENST00000569130 274 ntBASIC11.71□□□□□ -0.53
HOXA3O43365 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
HOXA3O43365 NAT9-224ENST00000583757 583 ntTSL 3 BASIC11.71□□□□□ -0.53
HOXA3O43365 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC11.71□□□□□ -0.53
HOXA3O43365 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC11.71□□□□□ -0.53
HOXA3O43365 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC11.71□□□□□ -0.53
HOXA3O43365 LINC01783-202ENST00000614408 828 ntBASIC11.71□□□□□ -0.53
HOXA3O43365 BX284668.2-205ENST00000619677 828 ntBASIC11.71□□□□□ -0.53
HOXA3O43365 DDX5-235ENST00000630471 473 ntTSL 4 BASIC11.71□□□□□ -0.53
HOXA3O43365 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
HOXA3O43365 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
HOXA3O43365 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC11.71□□□□□ -0.53
HOXA3O43365 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC11.71□□□□□ -0.54
HOXA3O43365 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC11.71□□□□□ -0.54
HOXA3O43365 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC11.71□□□□□ -0.54
HOXA3O43365 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC11.71□□□□□ -0.54
HOXA3O43365 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC11.71□□□□□ -0.54
HOXA3O43365 AC015909.3-201ENST00000572855 1794 ntBASIC11.71□□□□□ -0.54
HOXA3O43365 SF1-209ENST00000433274 2317 ntTSL 2 BASIC11.71□□□□□ -0.54
HOXA3O43365 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
HOXA3O43365 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
HOXA3O43365 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC11.71□□□□□ -0.54
HOXA3O43365 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
HOXA3O43365 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
HOXA3O43365 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.54
HOXA3O43365 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
HOXA3O43365 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
HOXA3O43365 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.54
HOXA3O43365 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HOXA3O43365 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
HOXA3O43365 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC11.7□□□□□ -0.54
HOXA3O43365 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
HOXA3O43365 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
HOXA3O43365 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
HOXA3O43365 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
HOXA3O43365 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HOXA3O43365 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
HOXA3O43365 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
HOXA3O43365 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms