Protein–RNA interactions for Protein: Q96PC3

AP1S3, AP-1 complex subunit sigma-3, humanhuman

Predictions only

Length 154 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP1S3Q96PC3 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
AP1S3Q96PC3 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.03■□□□□ 0.32
AP1S3Q96PC3 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
AP1S3Q96PC3 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC17.03■□□□□ 0.32
AP1S3Q96PC3 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
AP1S3Q96PC3 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
AP1S3Q96PC3 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC17.03■□□□□ 0.32
AP1S3Q96PC3 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
AP1S3Q96PC3 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC17.03■□□□□ 0.32
AP1S3Q96PC3 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC17.03■□□□□ 0.32
AP1S3Q96PC3 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
AP1S3Q96PC3 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
AP1S3Q96PC3 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
AP1S3Q96PC3 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
AP1S3Q96PC3 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
AP1S3Q96PC3 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
AP1S3Q96PC3 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
AP1S3Q96PC3 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
AP1S3Q96PC3 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC17.02■□□□□ 0.32
AP1S3Q96PC3 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC17.02■□□□□ 0.32
AP1S3Q96PC3 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
AP1S3Q96PC3 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
AP1S3Q96PC3 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
AP1S3Q96PC3 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
AP1S3Q96PC3 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
AP1S3Q96PC3 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
AP1S3Q96PC3 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC17.02■□□□□ 0.32
AP1S3Q96PC3 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
AP1S3Q96PC3 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
AP1S3Q96PC3 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC17.02■□□□□ 0.32
AP1S3Q96PC3 DUSP8P5-201ENST00000422884 1815 ntBASIC17.02■□□□□ 0.31
AP1S3Q96PC3 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
AP1S3Q96PC3 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
AP1S3Q96PC3 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.02■□□□□ 0.31
AP1S3Q96PC3 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
AP1S3Q96PC3 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
AP1S3Q96PC3 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
AP1S3Q96PC3 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC17.01■□□□□ 0.31
AP1S3Q96PC3 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
AP1S3Q96PC3 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
AP1S3Q96PC3 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
AP1S3Q96PC3 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
AP1S3Q96PC3 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
AP1S3Q96PC3 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
AP1S3Q96PC3 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC17■□□□□ 0.31
AP1S3Q96PC3 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC17■□□□□ 0.31
AP1S3Q96PC3 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC17■□□□□ 0.31
AP1S3Q96PC3 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC17■□□□□ 0.31
AP1S3Q96PC3 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC17■□□□□ 0.31
AP1S3Q96PC3 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
AP1S3Q96PC3 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
AP1S3Q96PC3 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
AP1S3Q96PC3 PFN2-211ENST00000489155 636 ntTSL 4 BASIC17■□□□□ 0.31
AP1S3Q96PC3 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
AP1S3Q96PC3 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
AP1S3Q96PC3 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC17■□□□□ 0.31
AP1S3Q96PC3 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
AP1S3Q96PC3 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC17■□□□□ 0.31
AP1S3Q96PC3 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
AP1S3Q96PC3 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
AP1S3Q96PC3 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
AP1S3Q96PC3 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
AP1S3Q96PC3 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
AP1S3Q96PC3 RPS2P35-201ENST00000443417 897 ntBASIC16.99■□□□□ 0.31
AP1S3Q96PC3 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
AP1S3Q96PC3 MIR3960-201ENST00000583311 91 ntBASIC16.99■□□□□ 0.31
AP1S3Q96PC3 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC16.99■□□□□ 0.31
AP1S3Q96PC3 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC16.99■□□□□ 0.31
AP1S3Q96PC3 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
AP1S3Q96PC3 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC16.99■□□□□ 0.31
AP1S3Q96PC3 MED17-221ENST00000639724 2317 ntTSL 5 BASIC16.99■□□□□ 0.31
AP1S3Q96PC3 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC16.99■□□□□ 0.31
AP1S3Q96PC3 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
AP1S3Q96PC3 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
AP1S3Q96PC3 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
AP1S3Q96PC3 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
AP1S3Q96PC3 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
AP1S3Q96PC3 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
AP1S3Q96PC3 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
AP1S3Q96PC3 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
AP1S3Q96PC3 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
AP1S3Q96PC3 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
AP1S3Q96PC3 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
AP1S3Q96PC3 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
AP1S3Q96PC3 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
AP1S3Q96PC3 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
AP1S3Q96PC3 ZNRF2P2-203ENST00000454624 420 ntBASIC16.98■□□□□ 0.31
AP1S3Q96PC3 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC16.98■□□□□ 0.31
AP1S3Q96PC3 CR559946.2-201ENST00000623684 991 ntBASIC16.98■□□□□ 0.31
AP1S3Q96PC3 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
AP1S3Q96PC3 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
AP1S3Q96PC3 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
AP1S3Q96PC3 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
AP1S3Q96PC3 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
AP1S3Q96PC3 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
AP1S3Q96PC3 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC16.97■□□□□ 0.31
AP1S3Q96PC3 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
AP1S3Q96PC3 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
AP1S3Q96PC3 AC004812.2-201ENST00000611079 2094 ntBASIC16.97■□□□□ 0.31
AP1S3Q96PC3 LSR-205ENST00000427250 1606 ntTSL 2 BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms