Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 PRKAR2A-202ENST00000296446 3318 ntTSL 1 (best) BASIC14.68□□□□□ -0.062e-7■■■■□ 21.2
YBX3P16989 NFATC3-210ENST00000562171 707 ntTSL 328.05■■■□□ 2.081e-10■■■■□ 21.2
YBX3P16989 CCDC25-206ENST00000520202 1734 ntTSL 1 (best)14.72□□□□□ -0.051e-8■■■■□ 21.2
YBX3P16989 CCDC25-201ENST00000356537 3626 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.761e-8■■■■□ 21.2
YBX3P16989 CCDC25-207ENST00000520486 3586 ntTSL 1 (best)9.81□□□□□ -0.841e-8■■■■□ 21.2
YBX3P16989 NUP205-207ENST00000489493 550 ntTSL 418.23■□□□□ 0.511e-14■■■■□ 21.2
YBX3P16989 USP7-207ENST00000563085 3194 ntTSL 27.61□□□□□ -1.195e-9■■■■□ 21.2
YBX3P16989 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.262e-9■■■■□ 21.2
YBX3P16989 RPA2-205ENST00000444045 682 ntTSL 517.72■□□□□ 0.434e-8■■■■□ 21.2
YBX3P16989 DCTN2-205ENST00000546758 817 ntTSL 58.3□□□□□ -1.085e-7■■■■□ 21.2
YBX3P16989 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.68e-7■■■■□ 21.2
YBX3P16989 SNX5-204ENST00000431277 840 ntTSL 520.86■□□□□ 0.938e-7■■■■□ 21.2
YBX3P16989 SNX5-214ENST00000490175 2025 ntTSL 1 (best)17.32■□□□□ 0.368e-7■■■■□ 21.2
YBX3P16989 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.288e-7■■■■□ 21.2
YBX3P16989 SNX5-211ENST00000483485 3087 ntTSL 28.01□□□□□ -1.138e-7■■■■□ 21.2
YBX3P16989 AC010343.1-201ENST00000467270 629 ntBASIC15.12■□□□□ 0.011e-6■■■■□ 21.2
YBX3P16989 COPS3-209ENST00000486810 938 ntTSL 36.82□□□□□ -1.326e-7■■■■□ 21.1
YBX3P16989 CAPNS1-212ENST00000591041 812 ntTSL 326.63■■□□□ 1.854e-7■■■■□ 21.1
YBX3P16989 ESYT2-203ENST00000435514 2090 ntTSL 218.03■□□□□ 0.482e-8■■■■□ 21.1
YBX3P16989 MRPS24-202ENST00000414932 1727 ntTSL 226.05■■□□□ 1.762e-8■■■■□ 21.1
YBX3P16989 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.642e-8■■■■□ 21.1
YBX3P16989 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC23.04■■□□□ 1.282e-8■■■■□ 21.1
YBX3P16989 MRPS24-204ENST00000467084 729 ntTSL 218.69■□□□□ 0.582e-8■■■■□ 21.1
YBX3P16989 MRPS24-205ENST00000483330 392 ntTSL 218.12■□□□□ 0.492e-8■■■■□ 21.1
YBX3P16989 URGCP-MRPS24-201ENST00000603700 795 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.342e-8■■■■□ 21.1
YBX3P16989 QARS-220ENST00000487495 451 ntTSL 38.78□□□□□ -12e-15■■■■□ 21.1
YBX3P16989 DHRS3-201ENST00000430996 826 ntTSL 324.06■■□□□ 1.446e-7■■■■□ 21.1
YBX3P16989 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.186e-7■■■■□ 21.1
YBX3P16989 DHRS3-202ENST00000464917 539 ntTSL 318.38■□□□□ 0.536e-7■■■■□ 21.1
YBX3P16989 MSMO1-204ENST00000505270 482 ntTSL 37.95□□□□□ -1.141e-22■■■■□ 21.1
YBX3P16989 MRPL9-207ENST00000478926 581 ntTSL 312.37□□□□□ -0.433e-8■■■■□ 21.1
YBX3P16989 PPIP5K2-206ENST00000504275 479 ntTSL 314.69□□□□□ -0.064e-8■■■■□ 21.1
YBX3P16989 PPIP5K2-208ENST00000507921 1516 ntTSL 213.33□□□□□ -0.284e-8■■■■□ 21.1
YBX3P16989 PPIP5K2-204ENST00000502481 473 ntTSL 412.81□□□□□ -0.364e-8■■■■□ 21.1
YBX3P16989 PPIP5K2-214ENST00000515845 505 ntTSL 39.93□□□□□ -0.824e-8■■■■□ 21.1
YBX3P16989 VAV2-204ENST00000472905 506 ntTSL 321.79■■□□□ 1.089e-7■■■■□ 21.1
YBX3P16989 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC22.63■■□□□ 1.212e-7■■■■□ 21.1
YBX3P16989 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC21.22■□□□□ 0.992e-7■■■■□ 21.1
YBX3P16989 GPX3-206ENST00000521632 1314 ntTSL 520.74■□□□□ 0.912e-7■■■■□ 21.1
YBX3P16989 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.372e-7■■■■□ 21.1
YBX3P16989 CFAP97-202ENST00000458385 4852 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.62e-7■■■■□ 21.1
YBX3P16989 VAV2-205ENST00000486113 523 ntTSL 217.01■□□□□ 0.311e-6■■■■□ 21.1
YBX3P16989 CISD1-201ENST00000333926 2479 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.421e-7■■■■□ 21.1
YBX3P16989 CISD1-202ENST00000464703 698 ntTSL 57.52□□□□□ -1.211e-7■■■■□ 21.1
YBX3P16989 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC21.05■□□□□ 0.961e-9■■■■□ 21.1
YBX3P16989 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.448e-7■■■■□ 21.1
YBX3P16989 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC16.42■□□□□ 0.228e-7■■■■□ 21.1
YBX3P16989 SMAP1-203ENST00000370455 3333 ntAPPRIS ALT1 TSL 1 (best) BASIC11.71□□□□□ -0.538e-7■■■■□ 21.1
YBX3P16989 HIST1H2BG-201ENST00000541790 1534 ntAPPRIS P1 BASIC13.92□□□□□ -0.182e-30■■■■□ 21
YBX3P16989 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC34.8■■■■□ 3.165e-11■■■■□ 21
YBX3P16989 LAPTM4B-202ENST00000517924 618 ntTSL 532.89■■■□□ 2.865e-11■■■■□ 21
YBX3P16989 TUBA1B-206ENST00000550367 835 ntTSL 313.75□□□□□ -0.216e-15■■■■□ 21
YBX3P16989 AIMP1-201ENST00000358008 2412 ntAPPRIS P3 TSL 2 BASIC10.4□□□□□ -0.742e-6■■■■□ 21
YBX3P16989 AIMP1-204ENST00000510207 568 ntTSL 47.1□□□□□ -1.272e-6■■■■□ 21
YBX3P16989 AIMP1-203ENST00000442366 2519 ntAPPRIS P3 TSL 5 BASIC7.1□□□□□ -1.272e-6■■■■□ 21
YBX3P16989 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC5.94□□□□□ -1.462e-6■■■■□ 21
YBX3P16989 MRPL35-201ENST00000254644 1061 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.451e-7■■■■□ 21
YBX3P16989 MRPL35-203ENST00000409180 651 ntAPPRIS ALT1 TSL 3 BASIC10.14□□□□□ -0.791e-7■■■■□ 21
YBX3P16989 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC5.54□□□□□ -1.521e-7■■■■□ 21
YBX3P16989 ALKBH5-201ENST00000399138 2748 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.35e-7■■■■□ 21
YBX3P16989 TM9SF4-204ENST00000442842 563 ntTSL 416.78■□□□□ 0.282e-6■■■■□ 21
YBX3P16989 TM9SF4-203ENST00000417389 553 ntTSL 414.28□□□□□ -0.122e-6■■■■□ 21
YBX3P16989 TM9SF4-205ENST00000450829 550 ntTSL 47.16□□□□□ -1.262e-6■■■■□ 21
YBX3P16989 POLR1D-205ENST00000472179 1021 ntTSL 220.87■□□□□ 0.933e-6■■■■□ 21
YBX3P16989 POLR1D-211ENST00000630281 1634 nt20.55■□□□□ 0.883e-6■■■■□ 21
YBX3P16989 POLR1D-219ENST00000636952 2869 ntTSL 514.01□□□□□ -0.173e-6■■■■□ 21
YBX3P16989 MAST1-204ENST00000589040 983 ntTSL 521.21■□□□□ 0.994e-6■■■■□ 21
YBX3P16989 ATF6-201ENST00000367942 7496 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.24e-6■■■■□ 21
YBX3P16989 HEPH-208ENST00000471121 802 ntTSL 212.21□□□□□ -0.455e-6■■■■□ 21
YBX3P16989 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC17.59■□□□□ 0.411e-11■■■■□ 21
YBX3P16989 LATS1-206ENST00000542747 3284 ntTSL 57.53□□□□□ -1.21e-11■■■■□ 21
YBX3P16989 IREB2-203ENST00000558570 2917 ntTSL 1 (best)7.23□□□□□ -1.251e-6■■■■□ 21
YBX3P16989 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.391e-6■■■■□ 21
YBX3P16989 IREB2-207ENST00000559676 973 ntTSL 56.36□□□□□ -1.391e-6■■■■□ 21
YBX3P16989 OPN3-206ENST00000490673 1816 ntTSL 1 (best)29.6■■■□□ 2.331e-6■■■■□ 21
YBX3P16989 OPN3-204ENST00000469376 1961 ntTSL 1 (best)28.59■■■□□ 2.171e-6■■■■□ 21
YBX3P16989 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.151e-6■■■■□ 21
YBX3P16989 OPN3-203ENST00000463155 806 ntTSL 39.92□□□□□ -0.821e-6■■■■□ 21
YBX3P16989 OPN3-202ENST00000462265 795 ntTSL 58.23□□□□□ -1.091e-6■■■■□ 21
YBX3P16989 STEAP3-203ENST00000393110 4262 ntTSL 1 (best) BASIC10.5□□□□□ -0.735e-8■■■■□ 21
YBX3P16989 STEAP3-201ENST00000393106 3915 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.845e-8■■■■□ 21
YBX3P16989 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC24.2■■□□□ 1.462e-12■■■■□ 21
YBX3P16989 GPAA1-218ENST00000534072 1090 ntTSL 222.74■■□□□ 1.232e-12■■■■□ 21
YBX3P16989 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.22e-12■■■■□ 21
YBX3P16989 GPAA1-212ENST00000529638 1570 ntTSL 521.17■□□□□ 0.982e-12■■■■□ 21
YBX3P16989 GPAA1-215ENST00000530796 936 ntTSL 317.38■□□□□ 0.372e-12■■■■□ 21
YBX3P16989 GDI2P2-201ENST00000445131 608 ntBASIC6.47□□□□□ -1.371e-6■■■■□ 21
YBX3P16989 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC24.8■■□□□ 1.563e-54■■■■□ 21
YBX3P16989 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC37.27■■■■□ 3.561e-6■■■■□ 21
YBX3P16989 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC34.22■■■■□ 3.071e-6■■■■□ 21
YBX3P16989 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.922e-6■■■■□ 21
YBX3P16989 UCHL3-203ENST00000471792 696 ntTSL 317.04■□□□□ 0.322e-6■■■■□ 21
YBX3P16989 UCHL3-206ENST00000618773 1050 ntTSL 5 BASIC14.28□□□□□ -0.122e-6■■■■□ 21
YBX3P16989 AL137782.1-201ENST00000563635 4128 ntTSL 5 BASIC10.18□□□□□ -0.782e-6■■■■□ 21
YBX3P16989 COPS3-202ENST00000417352 1009 ntTSL 59.51□□□□□ -0.896e-7■■■■□ 21
YBX3P16989 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.51e-9■■■■□ 21
YBX3P16989 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC20.46■□□□□ 0.871e-9■■■■□ 21
YBX3P16989 HEXB-203ENST00000504459 899 ntTSL 36.18□□□□□ -1.421e-9■■■■□ 21
YBX3P16989 MRPL21-202ENST00000450904 662 ntTSL 2 BASIC12.64□□□□□ -0.397e-10■■■■□ 20.9
YBX3P16989 LMO7-201ENST00000321797 5647 ntTSL 5 BASIC9.89□□□□□ -0.835e-7■■■■□ 20.9
Retrieved 100 of 29,075 protein–RNA pairs in 544.3 ms