Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
USP28Q96RU2 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC16.6■□□□□ 0.25
USP28Q96RU2 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP28Q96RU2 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
USP28Q96RU2 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP28Q96RU2 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP28Q96RU2 SMAGP-203ENST00000603798 2350 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP28Q96RU2 FAS-202ENST00000352159 1722 ntTSL 5 BASIC16.59■□□□□ 0.25
USP28Q96RU2 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC16.59■□□□□ 0.25
USP28Q96RU2 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC16.59■□□□□ 0.25
USP28Q96RU2 AC073548.1-201ENST00000624088 1882 ntBASIC16.59■□□□□ 0.25
USP28Q96RU2 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP28Q96RU2 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP28Q96RU2 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC16.59■□□□□ 0.25
USP28Q96RU2 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP28Q96RU2 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
USP28Q96RU2 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
USP28Q96RU2 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP28Q96RU2 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP28Q96RU2 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
USP28Q96RU2 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
USP28Q96RU2 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP28Q96RU2 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
USP28Q96RU2 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP28Q96RU2 SKA2-202ENST00000437036 625 ntTSL 2 BASIC16.59■□□□□ 0.25
USP28Q96RU2 AL645933.1-201ENST00000440087 609 ntBASIC16.59■□□□□ 0.25
USP28Q96RU2 CNN2P10-201ENST00000443067 918 ntBASIC16.59■□□□□ 0.25
USP28Q96RU2 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC16.59■□□□□ 0.25
USP28Q96RU2 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
USP28Q96RU2 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
USP28Q96RU2 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC16.59■□□□□ 0.25
USP28Q96RU2 MIR4783-201ENST00000580343 82 ntBASIC16.59■□□□□ 0.25
USP28Q96RU2 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
USP28Q96RU2 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC16.59■□□□□ 0.25
USP28Q96RU2 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC16.59■□□□□ 0.25
USP28Q96RU2 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC16.59■□□□□ 0.25
USP28Q96RU2 CU639417.3-201ENST00000624240 1404 ntBASIC16.59■□□□□ 0.25
USP28Q96RU2 PPT1-213ENST00000641319 2388 ntBASIC16.59■□□□□ 0.25
USP28Q96RU2 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP28Q96RU2 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP28Q96RU2 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
USP28Q96RU2 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
USP28Q96RU2 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
USP28Q96RU2 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
USP28Q96RU2 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP28Q96RU2 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
USP28Q96RU2 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
USP28Q96RU2 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP28Q96RU2 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC16.58■□□□□ 0.25
USP28Q96RU2 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
USP28Q96RU2 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
USP28Q96RU2 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
USP28Q96RU2 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC16.58■□□□□ 0.25
USP28Q96RU2 AC067750.1-201ENST00000608826 6545 ntBASIC16.58■□□□□ 0.25
USP28Q96RU2 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
USP28Q96RU2 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
USP28Q96RU2 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC16.58■□□□□ 0.25
USP28Q96RU2 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
USP28Q96RU2 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC16.58■□□□□ 0.25
USP28Q96RU2 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
USP28Q96RU2 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
USP28Q96RU2 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
USP28Q96RU2 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
USP28Q96RU2 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
USP28Q96RU2 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
USP28Q96RU2 USP17L6P-201ENST00000382470 1197 ntBASIC16.58■□□□□ 0.24
USP28Q96RU2 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC16.58■□□□□ 0.24
USP28Q96RU2 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC16.58■□□□□ 0.24
USP28Q96RU2 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC16.58■□□□□ 0.24
USP28Q96RU2 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC16.58■□□□□ 0.24
USP28Q96RU2 AL355994.2-201ENST00000447882 704 ntBASIC16.58■□□□□ 0.24
USP28Q96RU2 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
USP28Q96RU2 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC16.58■□□□□ 0.24
USP28Q96RU2 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC16.58■□□□□ 0.24
USP28Q96RU2 AC132192.2-201ENST00000596206 1147 ntBASIC16.58■□□□□ 0.24
USP28Q96RU2 AL008718.2-201ENST00000609206 1313 ntBASIC16.58■□□□□ 0.24
USP28Q96RU2 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
USP28Q96RU2 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
USP28Q96RU2 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
USP28Q96RU2 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
USP28Q96RU2 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC16.58■□□□□ 0.24
USP28Q96RU2 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
USP28Q96RU2 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC16.58■□□□□ 0.24
USP28Q96RU2 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
USP28Q96RU2 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
USP28Q96RU2 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC16.58■□□□□ 0.24
USP28Q96RU2 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC16.58■□□□□ 0.24
USP28Q96RU2 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
USP28Q96RU2 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
USP28Q96RU2 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC16.58■□□□□ 0.24
USP28Q96RU2 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
USP28Q96RU2 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
USP28Q96RU2 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC16.58■□□□□ 0.24
USP28Q96RU2 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
USP28Q96RU2 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC16.58■□□□□ 0.24
USP28Q96RU2 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
USP28Q96RU2 AL365181.3-201ENST00000605886 3222 ntBASIC16.58■□□□□ 0.24
USP28Q96RU2 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
USP28Q96RU2 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
USP28Q96RU2 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms