Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC14.71□□□□□ -0.05
PTPN4P29074 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTPN4P29074 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
PTPN4P29074 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTPN4P29074 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
PTPN4P29074 KRT17P5-203ENST00000445433 2333 ntTSL 2 BASIC14.71□□□□□ -0.05
PTPN4P29074 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTPN4P29074 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC14.71□□□□□ -0.05
PTPN4P29074 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTPN4P29074 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTPN4P29074 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC14.71□□□□□ -0.05
PTPN4P29074 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTPN4P29074 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC14.71□□□□□ -0.05
PTPN4P29074 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTPN4P29074 BAATP1-201ENST00000412284 1225 ntBASIC14.71□□□□□ -0.05
PTPN4P29074 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC14.71□□□□□ -0.05
PTPN4P29074 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
PTPN4P29074 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC14.71□□□□□ -0.05
PTPN4P29074 AP001063.1-201ENST00000568332 529 ntBASIC14.71□□□□□ -0.05
PTPN4P29074 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PTPN4P29074 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC14.71□□□□□ -0.05
PTPN4P29074 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC14.71□□□□□ -0.05
PTPN4P29074 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTPN4P29074 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PTPN4P29074 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTPN4P29074 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTPN4P29074 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC14.71□□□□□ -0.05
PTPN4P29074 GOSR2-235ENST00000640269 2190 ntTSL 5 BASIC14.71□□□□□ -0.05
PTPN4P29074 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTPN4P29074 AC012349.1-201ENST00000518662 2643 ntTSL 2 BASIC14.71□□□□□ -0.06
PTPN4P29074 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC14.71□□□□□ -0.06
PTPN4P29074 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
PTPN4P29074 DRD2-201ENST00000346454 2433 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
PTPN4P29074 BEND3P3-201ENST00000611030 2440 ntBASIC14.71□□□□□ -0.06
PTPN4P29074 AC134312.1-201ENST00000378417 3468 ntTSL 2 BASIC14.71□□□□□ -0.06
PTPN4P29074 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
PTPN4P29074 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN4P29074 CICP16-201ENST00000502609 2813 ntBASIC14.7□□□□□ -0.06
PTPN4P29074 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN4P29074 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN4P29074 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC14.7□□□□□ -0.06
PTPN4P29074 TP73-213ENST00000604479 1623 ntTSL 5 BASIC14.7□□□□□ -0.06
PTPN4P29074 CYP2AB1P-202ENST00000454440 1456 ntBASIC14.7□□□□□ -0.06
PTPN4P29074 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
PTPN4P29074 AC093525.8-201ENST00000624099 1342 ntBASIC14.7□□□□□ -0.06
PTPN4P29074 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN4P29074 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC14.7□□□□□ -0.06
PTPN4P29074 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
PTPN4P29074 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC14.7□□□□□ -0.06
PTPN4P29074 SLC29A1-201ENST00000371708 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN4P29074 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN4P29074 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN4P29074 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN4P29074 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN4P29074 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN4P29074 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
PTPN4P29074 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN4P29074 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
PTPN4P29074 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN4P29074 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
PTPN4P29074 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC14.7□□□□□ -0.06
PTPN4P29074 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN4P29074 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC14.7□□□□□ -0.06
PTPN4P29074 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC14.7□□□□□ -0.06
PTPN4P29074 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN4P29074 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN4P29074 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC14.7□□□□□ -0.06
PTPN4P29074 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC14.7□□□□□ -0.06
PTPN4P29074 CLUHP6-201ENST00000580789 941 ntBASIC14.7□□□□□ -0.06
PTPN4P29074 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC14.7□□□□□ -0.06
PTPN4P29074 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
PTPN4P29074 METTL26-214ENST00000614890 801 ntTSL 3 BASIC14.7□□□□□ -0.06
PTPN4P29074 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC14.7□□□□□ -0.06
PTPN4P29074 SEPT6-201ENST00000343984 2693 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN4P29074 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN4P29074 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN4P29074 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN4P29074 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN4P29074 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC14.7□□□□□ -0.06
PTPN4P29074 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN4P29074 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN4P29074 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC14.7□□□□□ -0.06
PTPN4P29074 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC14.7□□□□□ -0.06
PTPN4P29074 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN4P29074 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN4P29074 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN4P29074 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN4P29074 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN4P29074 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
PTPN4P29074 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PTPN4P29074 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PTPN4P29074 MYH14-201ENST00000262269 3848 ntTSL 5 BASIC14.69□□□□□ -0.06
PTPN4P29074 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PTPN4P29074 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
PTPN4P29074 DPP3-209ENST00000531863 2974 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PTPN4P29074 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC14.69□□□□□ -0.06
PTPN4P29074 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PTPN4P29074 GZMB-202ENST00000382540 816 ntTSL 5 BASIC14.69□□□□□ -0.06
PTPN4P29074 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC14.69□□□□□ -0.06
PTPN4P29074 USB1-202ENST00000423271 1217 ntTSL 2 BASIC14.69□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms