RNA–Protein interactions for RNA: ENST00000361138.6

SMC5-201, Transcript of structural maintenance of chromosomes 5, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC5, Length 5,980 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC5-201ENST00000361138 NISCHQ9Y2I1 1504 aa23.47■■□□□ 1.35
SMC5-201ENST00000361138 DCAF8L2P0C7V8 631 aa23.02■■□□□ 1.28
SMC5-201ENST00000361138 SUPT5HO00267 1087 aaKnown RBP22.89■■□□□ 1.26
SMC5-201ENST00000361138 SHROOM4Q9ULL8 1493 aa22.54■■□□□ 1.2
SMC5-201ENST00000361138 PCGF6Q9BYE7 350 aa22.15■■□□□ 1.14
SMC5-201ENST00000361138 PELP1Q8IZL8 1130 aaKnown RBP22.05■■□□□ 1.12
SMC5-201ENST00000361138 EHMT2Q96KQ7 1210 aa21.88■■□□□ 1.09
SMC5-201ENST00000361138 ZEB1P37275 1124 aaPredicted RBP21.8■■□□□ 1.08
SMC5-201ENST00000361138 MYT1Q01538 1121 aa21.68■■□□□ 1.06
SMC5-201ENST00000361138 CENPBP07199 599 aaPredicted RBP21.66■■□□□ 1.06
SMC5-201ENST00000361138 HRCP23327 699 aa21.64■■□□□ 1.06
SMC5-201ENST00000361138 FAM9AQ8IZU1 332 aaPredicted RBP21.48■■□□□ 1.03
SMC5-201ENST00000361138 CCER1Q8TC90 406 aaPredicted RBP21.36■■□□□ 1.01
SMC5-201ENST00000361138 APLP2Q06481 763 aa21.31■■□□□ 1
SMC5-201ENST00000361138 TTBK1Q5TCY1 1321 aaPredicted RBP21.29■■□□□ 1
SMC5-201ENST00000361138 TRIM26Q12899 539 aaPredicted RBP21.28■■□□□ 1
SMC5-201ENST00000361138 TRIM41Q8WV44 630 aa21.21■□□□□ 0.99
SMC5-201ENST00000361138 PPARGC1BQ86YN6 1023 aaKnown RBP21.14■□□□□ 0.97
SMC5-201ENST00000361138 YTHDC1Q96MU7 727 aaKnown RBP21.09■□□□□ 0.97
SMC5-201ENST00000361138 ERICH6Q7L0X2 663 aa21.09■□□□□ 0.97
SMC5-201ENST00000361138 CHIC1Q5VXU3 224 aa20.98■□□□□ 0.95
SMC5-201ENST00000361138 LOC105371045A0A1W2PR82 267 aa20.87■□□□□ 0.93
SMC5-201ENST00000361138 NEFLP07196 543 aa20.77■□□□□ 0.92
SMC5-201ENST00000361138 UBTFP17480 764 aaKnown RBP20.7■□□□□ 0.9
SMC5-201ENST00000361138 RANGAP1P46060 587 aaPredicted RBP20.68■□□□□ 0.9
SMC5-201ENST00000361138 DIEXFQ68CQ4 756 aaKnown RBP20.59■□□□□ 0.89
SMC5-201ENST00000361138 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.48■□□□□ 0.87
SMC5-201ENST00000361138 GTF3C3Q9Y5Q9 886 aa20.48■□□□□ 0.87
SMC5-201ENST00000361138 ABCC9O60706 1549 aa20.33■□□□□ 0.85
SMC5-201ENST00000361138 ACIN1Q9UKV3 1341 aaKnown RBP20.33■□□□□ 0.85
SMC5-201ENST00000361138 ATP1B4Q9UN42 357 aaPredicted RBP20.29■□□□□ 0.84
SMC5-201ENST00000361138 HNRNPUL2Q1KMD3 747 aaKnown RBP20.28■□□□□ 0.84
SMC5-201ENST00000361138 DCAF1Q9Y4B6 1507 aa20.19■□□□□ 0.82
SMC5-201ENST00000361138 ZNF316A6NFI3 1004 aaPredicted RBP20.08■□□□□ 0.81
SMC5-201ENST00000361138 ITGAEP38570 1179 aa20.07■□□□□ 0.8
SMC5-201ENST00000361138 SCAF1Q9H7N4 1312 aaKnown RBP20.04■□□□□ 0.8
SMC5-201ENST00000361138 BCANQ96GW7 911 aa19.95■□□□□ 0.78
SMC5-201ENST00000361138 DAXXQ9UER7 740 aaPredicted RBP19.94■□□□□ 0.78
SMC5-201ENST00000361138 PABPN1Q86U42 306 aaKnown RBP eCLIP19.91■□□□□ 0.78
SMC5-201ENST00000361138 RTL5Q5HYW3 569 aaPredicted RBP19.9■□□□□ 0.78
SMC5-201ENST00000361138 NEUROD1Q13562 356 aa19.88■□□□□ 0.77
SMC5-201ENST00000361138 MYO15BQ96JP2 1530 aa19.84■□□□□ 0.77
SMC5-201ENST00000361138 CLSPNQ9HAW4 1339 aa19.8■□□□□ 0.76
SMC5-201ENST00000361138 CDK11AQ9UQ88 783 aaPredicted RBP19.77■□□□□ 0.76
SMC5-201ENST00000361138 POLR3GLQ9BT43 218 aa19.74■□□□□ 0.75
SMC5-201ENST00000361138 CCDC180Q9P1Z9 1646 aa19.71■□□□□ 0.75
SMC5-201ENST00000361138 ANP32CO43423 234 aa19.69■□□□□ 0.74
SMC5-201ENST00000361138 ZCCHC6Q5VYS8 1495 aaKnown RBP19.64■□□□□ 0.74
SMC5-201ENST00000361138 CNGB1Q14028 1251 aaPredicted RBP19.62■□□□□ 0.73
SMC5-201ENST00000361138 FAM50AQ14320 339 aaKnown RBP19.6■□□□□ 0.73
SMC5-201ENST00000361138 FKBP8Q14318 412 aa19.53■□□□□ 0.72
SMC5-201ENST00000361138 MIER1Q8N108 512 aa19.45■□□□□ 0.7
SMC5-201ENST00000361138 CSRNP3Q8WYN3 585 aa19.44■□□□□ 0.7
SMC5-201ENST00000361138 ANP32AP39687 249 aaKnown RBP19.39■□□□□ 0.69
SMC5-201ENST00000361138 MYT1LQ9UL68 1186 aa19.37■□□□□ 0.69
SMC5-201ENST00000361138 TRIM52Q96A61 297 aa19.37■□□□□ 0.69
SMC5-201ENST00000361138 SCRIBQ14160 1630 aa19.36■□□□□ 0.69
SMC5-201ENST00000361138 ANP32EQ9BTT0 268 aa19.3■□□□□ 0.68
SMC5-201ENST00000361138 DDX10Q13206 875 aaKnown RBP19.22■□□□□ 0.67
SMC5-201ENST00000361138 NPM2Q86SE8 214 aaKnown RBP19.18■□□□□ 0.66
SMC5-201ENST00000361138 HNRNPUQ00839 825 aaKnown RBP eCLIP19.18■□□□□ 0.66
SMC5-201ENST00000361138 NBR1Q14596 966 aa19.12■□□□□ 0.65
SMC5-201ENST00000361138 ZNF326Q5BKZ1 582 aaKnown RBP19.11■□□□□ 0.65
SMC5-201ENST00000361138 TONSLQ96HA7 1378 aa19.09■□□□□ 0.65
SMC5-201ENST00000361138 RB1CC1Q8TDY2 1594 aa19.09■□□□□ 0.65
SMC5-201ENST00000361138 EIF5BO60841 1220 aaKnown RBP19.07■□□□□ 0.64
SMC5-201ENST00000361138 SUPT16HQ9Y5B9 1047 aaKnown RBP19.06■□□□□ 0.64
SMC5-201ENST00000361138 CEP162Q5TB80 1403 aa19.06■□□□□ 0.64
SMC5-201ENST00000361138 ZBTB47Q9UFB7 747 aaPredicted RBP19.04■□□□□ 0.64
SMC5-201ENST00000361138 SLC4A1APQ9BWU0 796 aaKnown RBP19.02■□□□□ 0.63
SMC5-201ENST00000361138 FAM9BQ8IZU0 186 aa19.01■□□□□ 0.63
SMC5-201ENST00000361138 IRX6P78412 446 aaPredicted RBP18.98■□□□□ 0.63
SMC5-201ENST00000361138 RSF1Q96T23 1441 aaPredicted RBP18.97■□□□□ 0.63
SMC5-201ENST00000361138 P3H3Q8IVL6 736 aa18.97■□□□□ 0.63
SMC5-201ENST00000361138 CLIP1P30622 1438 aa18.96■□□□□ 0.63
SMC5-201ENST00000361138 CCDC136Q96JN2 1154 aa18.96■□□□□ 0.63
SMC5-201ENST00000361138 BCL11AQ9H165 835 aa18.95■□□□□ 0.62
SMC5-201ENST00000361138 GOLGA3Q08378 1498 aa18.93■□□□□ 0.62
SMC5-201ENST00000361138 CANXP27824 592 aaKnown RBP18.93■□□□□ 0.62
SMC5-201ENST00000361138 EEA1Q15075 1411 aa18.89■□□□□ 0.61
SMC5-201ENST00000361138 GLIPR1L2Q4G1C9 344 aa18.87■□□□□ 0.61
SMC5-201ENST00000361138 TNIKQ9UKE5 1360 aa18.87■□□□□ 0.61
SMC5-201ENST00000361138 NACADO15069 1562 aa18.87■□□□□ 0.61
SMC5-201ENST00000361138 HIRIP3Q9BW71 556 aaPredicted RBP18.84■□□□□ 0.61
SMC5-201ENST00000361138 MRS2Q9HD23 443 aa18.84■□□□□ 0.61
SMC5-201ENST00000361138 FBLN2P98095 1184 aa18.83■□□□□ 0.6
SMC5-201ENST00000361138 TMC1Q8TDI8 760 aa18.74■□□□□ 0.59
SMC5-201ENST00000361138 RBM19Q9Y4C8 960 aaKnown RBP18.72■□□□□ 0.59
SMC5-201ENST00000361138 UPF2Q9HAU5 1272 aaKnown RBP18.71■□□□□ 0.59
SMC5-201ENST00000361138 DDRGK1Q96HY6 314 aa18.71■□□□□ 0.59
SMC5-201ENST00000361138 ANP32BQ92688 251 aaKnown RBP18.71■□□□□ 0.59
SMC5-201ENST00000361138 PPP4R2Q9NY27 417 aa18.7■□□□□ 0.58
SMC5-201ENST00000361138 NOP58Q9Y2X3 529 aaKnown RBP18.7■□□□□ 0.58
SMC5-201ENST00000361138 SALL2Q9Y467 1007 aaPredicted RBP18.7■□□□□ 0.58
SMC5-201ENST00000361138 TSHZ2Q9NRE2 1034 aa18.7■□□□□ 0.58
SMC5-201ENST00000361138 CEP164Q9UPV0 1460 aa18.69■□□□□ 0.58
SMC5-201ENST00000361138 ARID3CA6NKF2 412 aa18.67■□□□□ 0.58
SMC5-201ENST00000361138 EIF4G2P78344 907 aaKnown RBP eCLIP18.67■□□□□ 0.58
SMC5-201ENST00000361138 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.63■□□□□ 0.57
SMC5-201ENST00000361138 DEKP35659 375 aaKnown RBP18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 91.9 ms