Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC020922.3-201ENST00000595064 547 ntBASIC16.56■□□□□ 0.24
SMARCA1P28370 IRF3-215ENST00000596822 823 ntTSL 3 BASIC16.56■□□□□ 0.24
SMARCA1P28370 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC16.56■□□□□ 0.24
SMARCA1P28370 AF254983.2-201ENST00000612331 135 ntBASIC16.56■□□□□ 0.24
SMARCA1P28370 LINC01783-202ENST00000614408 828 ntBASIC16.56■□□□□ 0.24
SMARCA1P28370 BX284668.2-205ENST00000619677 828 ntBASIC16.56■□□□□ 0.24
SMARCA1P28370 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
SMARCA1P28370 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC16.56■□□□□ 0.24
SMARCA1P28370 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC16.56■□□□□ 0.24
SMARCA1P28370 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC16.56■□□□□ 0.24
SMARCA1P28370 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SMARCA1P28370 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC16.56■□□□□ 0.24
SMARCA1P28370 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC16.56■□□□□ 0.24
SMARCA1P28370 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC16.56■□□□□ 0.24
SMARCA1P28370 AC015909.3-201ENST00000572855 1794 ntBASIC16.56■□□□□ 0.24
SMARCA1P28370 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC16.56■□□□□ 0.24
SMARCA1P28370 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
SMARCA1P28370 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC16.56■□□□□ 0.24
SMARCA1P28370 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
SMARCA1P28370 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
SMARCA1P28370 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SMARCA1P28370 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SMARCA1P28370 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SMARCA1P28370 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC16.55■□□□□ 0.24
SMARCA1P28370 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SMARCA1P28370 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SMARCA1P28370 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC16.55■□□□□ 0.24
SMARCA1P28370 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
SMARCA1P28370 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC16.55■□□□□ 0.24
SMARCA1P28370 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC16.55■□□□□ 0.24
SMARCA1P28370 KRT8P31-201ENST00000504812 1408 ntBASIC16.55■□□□□ 0.24
SMARCA1P28370 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
SMARCA1P28370 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SMARCA1P28370 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SMARCA1P28370 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SMARCA1P28370 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC16.55■□□□□ 0.24
SMARCA1P28370 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SMARCA1P28370 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SMARCA1P28370 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SMARCA1P28370 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC16.55■□□□□ 0.24
SMARCA1P28370 HMGA1P1-201ENST00000415560 1062 ntBASIC16.55■□□□□ 0.24
SMARCA1P28370 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC16.55■□□□□ 0.24
SMARCA1P28370 RN7SL277P-201ENST00000481521 288 ntBASIC16.55■□□□□ 0.24
SMARCA1P28370 MAX-218ENST00000557746 571 ntTSL 4 BASIC16.55■□□□□ 0.24
SMARCA1P28370 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SMARCA1P28370 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC16.55■□□□□ 0.24
SMARCA1P28370 NAT9-211ENST00000580632 799 ntTSL 3 BASIC16.55■□□□□ 0.24
SMARCA1P28370 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
SMARCA1P28370 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC16.55■□□□□ 0.24
SMARCA1P28370 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC16.55■□□□□ 0.24
SMARCA1P28370 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC16.55■□□□□ 0.24
SMARCA1P28370 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
SMARCA1P28370 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SMARCA1P28370 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC16.55■□□□□ 0.24
SMARCA1P28370 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
SMARCA1P28370 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SMARCA1P28370 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
SMARCA1P28370 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SMARCA1P28370 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
SMARCA1P28370 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC16.55■□□□□ 0.24
SMARCA1P28370 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SMARCA1P28370 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SMARCA1P28370 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
SMARCA1P28370 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SMARCA1P28370 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SMARCA1P28370 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
SMARCA1P28370 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
SMARCA1P28370 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC16.54■□□□□ 0.24
SMARCA1P28370 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
SMARCA1P28370 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SMARCA1P28370 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SMARCA1P28370 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SMARCA1P28370 AMT-256ENST00000638063 1783 ntTSL 5 BASIC16.54■□□□□ 0.24
SMARCA1P28370 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SMARCA1P28370 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SMARCA1P28370 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SMARCA1P28370 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SMARCA1P28370 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
SMARCA1P28370 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SMARCA1P28370 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SMARCA1P28370 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC16.54■□□□□ 0.24
SMARCA1P28370 RPSAP15-201ENST00000448168 861 ntBASIC16.54■□□□□ 0.24
SMARCA1P28370 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC16.54■□□□□ 0.24
SMARCA1P28370 SUPT4H1P2-201ENST00000501248 353 ntBASIC16.54■□□□□ 0.24
SMARCA1P28370 NUP210P1-202ENST00000504322 710 ntBASIC16.54■□□□□ 0.24
SMARCA1P28370 AC114947.1-202ENST00000514136 344 ntBASIC16.54■□□□□ 0.24
SMARCA1P28370 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC16.54■□□□□ 0.24
SMARCA1P28370 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC16.54■□□□□ 0.24
SMARCA1P28370 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SMARCA1P28370 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SMARCA1P28370 AC097724.1-201ENST00000609581 426 ntBASIC16.54■□□□□ 0.24
SMARCA1P28370 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SMARCA1P28370 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC16.54■□□□□ 0.24
SMARCA1P28370 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC16.54■□□□□ 0.24
SMARCA1P28370 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SMARCA1P28370 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC16.54■□□□□ 0.24
SMARCA1P28370 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
SMARCA1P28370 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SMARCA1P28370 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SMARCA1P28370 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms