Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CTDP1Q9Y5B0 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CTDP1Q9Y5B0 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CTDP1Q9Y5B0 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 AC131212.3-201ENST00000624087 4219 ntBASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 AC006504.5-208ENST00000588784 2401 ntBASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 ELAVL1-201ENST00000407627 6015 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 FGFR3P1-201ENST00000449999 601 ntBASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 RPS2P36-201ENST00000456516 831 ntBASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 MIR4706-201ENST00000582134 82 ntBASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 GPC6-201ENST00000377047 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 AC018442.1-201ENST00000421439 2061 ntBASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 AC023157.3-201ENST00000619086 2088 ntBASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
CTDP1Q9Y5B0 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 MIR33B-201ENST00000385104 96 ntBASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 MPV17-204ENST00000399052 749 ntTSL 4 BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 KRT18P36-201ENST00000411618 1276 ntBASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 NOC2LP1-201ENST00000450578 752 ntBASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 RN7SL530P-201ENST00000485097 298 ntBASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 AC026803.1-201ENST00000569130 274 ntBASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 AC124068.2-201ENST00000569473 1109 ntBASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 CDK7-214ENST00000626796 358 ntTSL 5 BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 AL031595.1-201ENST00000623969 4709 ntBASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 SH3PXD2B-201ENST00000311601 7777 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms