Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 MCC-201ENST00000302475 8257 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 AC090643.2-201ENST00000623442 2029 ntBASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 MPV17-205ENST00000402310 906 ntTSL 5 BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 FAM197Y7-201ENST00000432892 766 ntBASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 FTH1P14-201ENST00000482930 551 ntBASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 LARP4-220ENST00000615080 856 ntTSL 5 BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 AC006453.4-201ENST00000636949 1252 ntBASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 IGF2BP1-201ENST00000290341 8274 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 ARHGAP23P1-201ENST00000562773 1937 ntBASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 TUBB8P4-201ENST00000511806 1324 ntBASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 MBLAC2-202ENST00000514906 1936 ntBASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 AL136309.1-201ENST00000403917 691 ntBASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 CNN2P8-201ENST00000421872 913 ntBASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 AC016694.1-201ENST00000434179 700 ntBASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 TTTY23B-201ENST00000442790 549 ntBASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 AL035414.1-201ENST00000451327 857 ntBASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 RN7SL692P-201ENST00000464677 288 ntBASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 AC009446.1-201ENST00000519840 808 ntTSL 2 BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 RN7SL713P-201ENST00000582127 302 ntBASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 BTNL10-201ENST00000595971 695 ntBASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 CICP4-201ENST00000447359 2812 ntBASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HIF3AQ9Y2N7 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms